NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	J7U00_RS01115	Genome accession	NZ_CP072431
Coordinates	193502..193894 (+)	Length	130 a.a.
NCBI ID	WP_011226610.1	Uniprot ID	A0A3G6K2H6
Organism	Streptococcus thermophilus strain S24745
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 188502..198894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U00_RS01080 (J7U00_01090)	proC	188704..189474 (-)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-
J7U00_RS01085 (J7U00_01095)	pepA	189490..190557 (-)	1068	WP_002952022.1	glutamyl aminopeptidase	-
J7U00_RS01090 (J7U00_01100)	-	190657..190941 (+)	285	WP_011681678.1	DUF4651 domain-containing protein	-
J7U00_RS01095 (J7U00_01105)	-	190938..191252 (+)	315	WP_011226613.1	thioredoxin family protein	-
J7U00_RS01100 (J7U00_01110)	ytpR	191262..191885 (+)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
J7U00_RS01105 (J7U00_01115)	-	192023..193054 (+)	1032	WP_014608738.1	YeeE/YedE family protein	-
J7U00_RS01110 (J7U00_01120)	-	193069..193296 (+)	228	WP_011226611.1	sulfurtransferase TusA family protein	-
J7U00_RS01115 (J7U00_01125)	ssbA	193502..193894 (+)	393	WP_011226610.1	single-stranded DNA-binding protein	Machinery gene
J7U00_RS01120 (J7U00_01130)	tadA	194653..195171 (+)	519	WP_014608735.1	tRNA adenosine(34) deaminase TadA	-
J7U00_RS01125	-	195252..195515 (-)	264	WP_014608734.1	hypothetical protein	-
J7U00_RS01130 (J7U00_01135)	-	195568..195760 (-)	193	Protein_219	class IIb bacteriocin, lactobin A/cerein 7B family	-
J7U00_RS01140 (J7U00_01145)	-	196129..196962 (+)	834	WP_207559886.1	putative RNA methyltransferase	-
J7U00_RS01145 (J7U00_01150)	-	197077..197831 (+)	755	Protein_221	HAD family hydrolase	-
J7U00_RS01150 (J7U00_01155)	dapD	197917..198615 (+)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-

Sequence

Protein

Download Length: 130 a.a. Molecular weight: 14773.70 Da Isoelectric Point: 5.9275

                                >NTDB_id=552734 J7U00_RS01115 WP_011226610.1 193502..193894(+) (ssbA) [Streptococcus thermophilus strain S24745]

MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR

KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

Download Length: 393 bp

                                >NTDB_id=552734 J7U00_RS01115 WP_011226610.1 193502..193894(+) (ssbA) [Streptococcus thermophilus strain S24745]

ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC

ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT

GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT

AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA

GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A3G6K2H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Streptococcus mutans UA159	79.389	100	0.8
ssbB	Streptococcus sobrinus strain NIDR 6715-7	76.336	100	0.769
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377

Detailed information NTG0552734