Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   J4854_RS01150 Genome accession   NZ_CP072329
Coordinates   196850..197254 (+) Length   134 a.a.
NCBI ID   WP_234700114.1    Uniprot ID   -
Organism   Streptococcus lactarius strain CCUG 66490     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191850..202254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS01125 (J4854_01125) - 192834..193937 (+) 1104 WP_200772862.1 glycosyl hydrolase family 8 -
  J4854_RS01130 (J4854_01130) - 194166..194555 (+) 390 WP_200772958.1 DUF1033 family protein -
  J4854_RS01135 (J4854_01135) comYA 194641..195582 (+) 942 WP_200772863.1 competence type IV pilus ATPase ComGA Machinery gene
  J4854_RS01140 (J4854_01140) comYB 195515..196546 (+) 1032 WP_244967046.1 competence type IV pilus assembly protein ComGB Machinery gene
  J4854_RS01145 (J4854_01145) comYC 196543..196860 (+) 318 WP_187539705.1 competence type IV pilus major pilin ComGC Machinery gene
  J4854_RS01150 (J4854_01150) comYD 196850..197254 (+) 405 WP_234700114.1 competence type IV pilus minor pilin ComGD Machinery gene
  J4854_RS01155 (J4854_01155) comGE 197295..197507 (+) 213 WP_234700115.1 competence type IV pilus minor pilin ComGE -
  J4854_RS01160 (J4854_01160) comGF/cglF 197497..197949 (+) 453 WP_200772864.1 competence type IV pilus minor pilin ComGF Machinery gene
  J4854_RS01165 (J4854_01165) comGG 197915..198382 (+) 468 WP_200772865.1 competence type IV pilus minor pilin ComGG -
  J4854_RS01170 (J4854_01170) comYH 198413..199366 (+) 954 WP_200772866.1 class I SAM-dependent methyltransferase Machinery gene
  J4854_RS01175 (J4854_01175) - 199418..200611 (+) 1194 WP_200772867.1 acetate kinase -
  J4854_RS01180 (J4854_01180) folP 201028..201987 (+) 960 WP_200772868.1 dihydropteroate synthase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14929.18 Da        Isoelectric Point: 8.4419

>NTDB_id=552020 J4854_RS01150 WP_234700114.1 196850..197254(+) (comYD) [Streptococcus lactarius strain CCUG 66490]
MQIKAFTLVETLLTLMIVSFIYMGLTGSVKTSFQQVEEKVFFAEFEHLYQESQKIALAKQTELDLEVSASEIRTPYQTVS
IPASVSVQDPKTIQLDRAGGNSSLANLHFTTQRGVVTYQLSLGNGKIKKSIQPR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=552020 J4854_RS01150 WP_234700114.1 196850..197254(+) (comYD) [Streptococcus lactarius strain CCUG 66490]
TTGCAGATTAAGGCTTTTACCTTGGTGGAGACACTCTTGACCTTGATGATTGTGAGTTTCATATATATGGGTCTAACTGG
ATCTGTCAAGACTAGTTTTCAGCAGGTGGAGGAAAAAGTATTTTTTGCAGAGTTTGAACACCTTTACCAAGAAAGTCAAA
AGATCGCTCTGGCAAAGCAAACAGAGCTAGATCTAGAAGTGAGTGCCAGTGAGATTCGTACGCCTTACCAGACGGTGAGC
ATTCCTGCATCGGTGAGTGTACAAGACCCGAAAACGATTCAATTAGACCGAGCAGGTGGGAATTCCTCCCTTGCAAATCT
TCATTTTACTACACAGAGAGGAGTGGTGACCTATCAGCTATCGCTTGGTAATGGAAAAATTAAAAAGAGTATCCAGCCCC
GCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

50

97.015

0.485
  comGD/cglD Streptococcus mitis NCTC 12261

47.287

96.269

0.455
  comGD/cglD Streptococcus mitis SK321

47.244

94.776

0.448
  comGD/cglD Streptococcus pneumoniae Rx1

47.244

94.776

0.448
  comGD/cglD Streptococcus pneumoniae D39

47.244

94.776

0.448
  comGD/cglD Streptococcus pneumoniae R6

47.244

94.776

0.448
  comGD/cglD Streptococcus pneumoniae TIGR4

46.457

94.776

0.44
  comYD Streptococcus mutans UA140

42.308

97.015

0.41
  comYD Streptococcus mutans UA159

42.308

97.015

0.41