Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LUV23_RS36485 Genome accession   NZ_CP089536
Coordinates   8802675..8803295 (-) Length   206 a.a.
NCBI ID   WP_206333728.1    Uniprot ID   -
Organism   Streptomyces sp. HNM0561     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8797675..8808295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV23_RS36465 (LUV23_36465) - 8798176..8799405 (-) 1230 WP_069869767.1 DUF349 domain-containing protein -
  LUV23_RS36470 (LUV23_36470) - 8799614..8800477 (-) 864 WP_069869768.1 peptidylprolyl isomerase -
  LUV23_RS36475 (LUV23_36475) - 8800631..8801347 (+) 717 WP_069869769.1 MBL fold metallo-hydrolase -
  LUV23_RS36480 (LUV23_36480) hisS 8801361..8802623 (+) 1263 WP_069869770.1 histidine--tRNA ligase -
  LUV23_RS36485 (LUV23_36485) vraR 8802675..8803295 (-) 621 WP_206333728.1 response regulator transcription factor Regulator
  LUV23_RS36490 (LUV23_36490) - 8803292..8804587 (-) 1296 WP_206333729.1 sensor histidine kinase -
  LUV23_RS36495 (LUV23_36495) - 8804545..8805405 (-) 861 WP_147965155.1 ABC transporter permease -
  LUV23_RS36500 (LUV23_36500) - 8805402..8806274 (-) 873 WP_099017182.1 ABC transporter ATP-binding protein -
  LUV23_RS36505 (LUV23_36505) - 8806460..8807116 (+) 657 WP_206333730.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22023.42 Da        Isoelectric Point: 5.3931

>NTDB_id=552022 LUV23_RS36485 WP_206333728.1 8802675..8803295(-) (vraR) [Streptomyces sp. HNM0561]
MIRILIADDHPVVREGLRGMLGAESDLTVVGEAASGPRAEALCASLHPDVVLMDLRMPDGDGVESIARMTAAGLPSRVIV
LTTYETDGDILRAVEAGAAGYLLKDMPRTELAEAVRSAARGETVLAPSVAARLMDQLRDRPERPRLSERETAVLRLVAEG
CTNAEIGRRLFIGESTVKTHLLRAFGKLGVDDRTAAVTSAMRLGLL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=552022 LUV23_RS36485 WP_206333728.1 8802675..8803295(-) (vraR) [Streptomyces sp. HNM0561]
GTGATCCGGATCCTGATCGCGGACGACCATCCGGTGGTGCGGGAGGGGCTGCGCGGCATGCTCGGCGCCGAATCCGATCT
GACGGTCGTCGGCGAGGCGGCGAGCGGGCCGCGGGCGGAGGCGCTGTGTGCCTCGCTGCACCCCGATGTGGTGCTGATGG
ACCTGCGGATGCCGGACGGCGACGGGGTGGAGTCGATCGCCCGGATGACCGCCGCCGGGCTGCCCTCCCGGGTGATCGTG
CTGACCACGTACGAGACGGACGGGGACATCCTGCGCGCGGTGGAGGCGGGCGCGGCGGGCTATCTGCTCAAGGACATGCC
CCGCACCGAACTCGCCGAGGCCGTACGCTCCGCCGCCCGCGGTGAGACGGTGCTGGCCCCGTCGGTCGCCGCCCGGCTCA
TGGACCAGCTGCGCGACCGGCCCGAGCGCCCCCGCCTCTCCGAACGTGAGACGGCCGTGCTGCGGCTGGTCGCGGAGGGG
TGCACCAACGCGGAGATCGGCCGCCGTCTGTTCATCGGCGAATCGACGGTGAAGACCCATCTGCTGCGCGCCTTCGGCAA
GCTGGGCGTGGACGACCGCACCGCGGCGGTCACCAGCGCGATGCGGCTGGGGCTGCTCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(146-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.063

100

0.413
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.398