Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | J4854_RS01170 | Genome accession | NZ_CP072329 |
| Coordinates | 198413..199366 (+) | Length | 317 a.a. |
| NCBI ID | WP_200772866.1 | Uniprot ID | - |
| Organism | Streptococcus lactarius strain CCUG 66490 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 193413..204366
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4854_RS01130 (J4854_01130) | - | 194166..194555 (+) | 390 | WP_200772958.1 | DUF1033 family protein | - |
| J4854_RS01135 (J4854_01135) | comYA | 194641..195582 (+) | 942 | WP_200772863.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| J4854_RS01140 (J4854_01140) | comYB | 195515..196546 (+) | 1032 | WP_244967046.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| J4854_RS01145 (J4854_01145) | comYC | 196543..196860 (+) | 318 | WP_187539705.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| J4854_RS01150 (J4854_01150) | comYD | 196850..197254 (+) | 405 | WP_234700114.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| J4854_RS01155 (J4854_01155) | comGE | 197295..197507 (+) | 213 | WP_234700115.1 | competence type IV pilus minor pilin ComGE | - |
| J4854_RS01160 (J4854_01160) | comGF/cglF | 197497..197949 (+) | 453 | WP_200772864.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| J4854_RS01165 (J4854_01165) | comGG | 197915..198382 (+) | 468 | WP_200772865.1 | competence type IV pilus minor pilin ComGG | - |
| J4854_RS01170 (J4854_01170) | comYH | 198413..199366 (+) | 954 | WP_200772866.1 | class I SAM-dependent methyltransferase | Machinery gene |
| J4854_RS01175 (J4854_01175) | - | 199418..200611 (+) | 1194 | WP_200772867.1 | acetate kinase | - |
| J4854_RS01180 (J4854_01180) | folP | 201028..201987 (+) | 960 | WP_200772868.1 | dihydropteroate synthase | - |
| J4854_RS01185 (J4854_01185) | - | 201988..203298 (+) | 1311 | WP_200772869.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| J4854_RS01190 (J4854_01190) | folE | 203307..203861 (+) | 555 | WP_200772870.1 | GTP cyclohydrolase I FolE | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35965.74 Da Isoelectric Point: 4.2239
>NTDB_id=552022 J4854_RS01170 WP_200772866.1 198413..199366(+) (comYH) [Streptococcus lactarius strain CCUG 66490]
MNFEKIEQAYTYLLENVQSIQNELATSFYDALVEQNAIYLDGETSLEVVKNNHQRLKELQLSKEEWRRAYQFLFMKAAQT
EPLQANHQFTPDAIGFILTFLIDQLAKSDQVDVLEVGSGTGNLAETIVNNSRLEMSYLGLEVDDLLIDLSASIADVMASS
VAFVQGDAVRPQVLKESDLIVSDLPIGYYPDDAIAQRYQVASSEGHTYAHHLMMEQALKYLKPQGVAIFLAPNNLLTSPQ
SDLLKAWLKEHAQLLAMMTLPESLFSNPAYAKTIFVFKKQEEGQMQPFAYPFTNLQDQDEIVRFMESFQNWLQDSEI
MNFEKIEQAYTYLLENVQSIQNELATSFYDALVEQNAIYLDGETSLEVVKNNHQRLKELQLSKEEWRRAYQFLFMKAAQT
EPLQANHQFTPDAIGFILTFLIDQLAKSDQVDVLEVGSGTGNLAETIVNNSRLEMSYLGLEVDDLLIDLSASIADVMASS
VAFVQGDAVRPQVLKESDLIVSDLPIGYYPDDAIAQRYQVASSEGHTYAHHLMMEQALKYLKPQGVAIFLAPNNLLTSPQ
SDLLKAWLKEHAQLLAMMTLPESLFSNPAYAKTIFVFKKQEEGQMQPFAYPFTNLQDQDEIVRFMESFQNWLQDSEI
Nucleotide
Download Length: 954 bp
>NTDB_id=552022 J4854_RS01170 WP_200772866.1 198413..199366(+) (comYH) [Streptococcus lactarius strain CCUG 66490]
ATGAATTTCGAAAAAATTGAACAAGCCTATACCTATCTATTAGAAAATGTCCAAAGCATTCAAAATGAGTTGGCAACGAG
TTTTTATGATGCCTTGGTCGAACAAAATGCGATCTATCTGGATGGTGAGACAAGCCTGGAAGTCGTCAAAAACAATCACC
AACGTTTAAAGGAGCTTCAATTAAGCAAGGAAGAATGGCGCAGGGCCTATCAGTTTCTCTTTATGAAGGCCGCACAGACC
GAGCCCTTGCAAGCTAACCATCAGTTCACACCGGATGCAATTGGCTTTATCCTAACATTTTTGATTGATCAATTGGCCAA
AAGTGACCAAGTTGATGTCTTGGAAGTAGGGAGCGGCACAGGTAATCTCGCTGAGACCATTGTCAACAATAGTCGCTTGG
AAATGAGTTATTTGGGATTGGAAGTGGATGATCTCTTGATCGACTTGTCTGCTAGTATTGCAGATGTTATGGCGTCGAGT
GTGGCATTTGTCCAAGGAGATGCGGTGCGCCCTCAAGTCTTGAAAGAAAGTGACTTGATTGTAAGTGACCTTCCCATCGG
CTACTATCCTGATGATGCAATTGCACAGCGTTACCAAGTGGCAAGCTCAGAAGGGCATACCTATGCCCATCACCTGATGA
TGGAACAGGCCTTGAAGTACTTGAAACCTCAAGGAGTGGCGATCTTTTTAGCGCCCAATAATCTTTTGACGAGCCCTCAG
AGCGATCTCTTGAAGGCCTGGTTGAAAGAACATGCCCAACTACTAGCCATGATGACCTTGCCCGAATCCCTCTTTTCAAA
CCCAGCTTATGCTAAGACTATTTTTGTCTTTAAAAAGCAAGAAGAAGGACAGATGCAACCATTTGCCTATCCATTTACAA
ATTTACAAGATCAAGATGAGATTGTTCGCTTTATGGAAAGTTTCCAAAACTGGTTACAGGATAGTGAAATTTGA
ATGAATTTCGAAAAAATTGAACAAGCCTATACCTATCTATTAGAAAATGTCCAAAGCATTCAAAATGAGTTGGCAACGAG
TTTTTATGATGCCTTGGTCGAACAAAATGCGATCTATCTGGATGGTGAGACAAGCCTGGAAGTCGTCAAAAACAATCACC
AACGTTTAAAGGAGCTTCAATTAAGCAAGGAAGAATGGCGCAGGGCCTATCAGTTTCTCTTTATGAAGGCCGCACAGACC
GAGCCCTTGCAAGCTAACCATCAGTTCACACCGGATGCAATTGGCTTTATCCTAACATTTTTGATTGATCAATTGGCCAA
AAGTGACCAAGTTGATGTCTTGGAAGTAGGGAGCGGCACAGGTAATCTCGCTGAGACCATTGTCAACAATAGTCGCTTGG
AAATGAGTTATTTGGGATTGGAAGTGGATGATCTCTTGATCGACTTGTCTGCTAGTATTGCAGATGTTATGGCGTCGAGT
GTGGCATTTGTCCAAGGAGATGCGGTGCGCCCTCAAGTCTTGAAAGAAAGTGACTTGATTGTAAGTGACCTTCCCATCGG
CTACTATCCTGATGATGCAATTGCACAGCGTTACCAAGTGGCAAGCTCAGAAGGGCATACCTATGCCCATCACCTGATGA
TGGAACAGGCCTTGAAGTACTTGAAACCTCAAGGAGTGGCGATCTTTTTAGCGCCCAATAATCTTTTGACGAGCCCTCAG
AGCGATCTCTTGAAGGCCTGGTTGAAAGAACATGCCCAACTACTAGCCATGATGACCTTGCCCGAATCCCTCTTTTCAAA
CCCAGCTTATGCTAAGACTATTTTTGTCTTTAAAAAGCAAGAAGAAGGACAGATGCAACCATTTGCCTATCCATTTACAA
ATTTACAAGATCAAGATGAGATTGTTCGCTTTATGGAAAGTTTCCAAAACTGGTTACAGGATAGTGAAATTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
59.683 |
99.369 |
0.593 |
| comYH | Streptococcus mutans UA140 |
59.683 |
99.369 |
0.593 |