Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   B938_RS11850 Genome accession   NC_019842
Coordinates   2489385..2490455 (-) Length   356 a.a.
NCBI ID   WP_015240212.1    Uniprot ID   -
Organism   Bacillus velezensis AS43.3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2484385..2495455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS11800 (B938_11870) sipW 2484445..2485029 (-) 585 WP_015240205.1 signal peptidase I SipW -
  B938_RS11805 (B938_11875) tapA 2485001..2485672 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  B938_RS11810 (B938_11880) - 2485931..2486260 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  B938_RS11815 (B938_11885) - 2486300..2486479 (-) 180 WP_003153093.1 YqzE family protein -
  B938_RS11820 (B938_11890) comGG 2486536..2486913 (-) 378 WP_015240208.1 competence type IV pilus minor pilin ComGG Machinery gene
  B938_RS11825 (B938_11895) comGF 2486914..2487414 (-) 501 WP_257720329.1 competence type IV pilus minor pilin ComGF -
  B938_RS11830 (B938_11900) comGE 2487323..2487637 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  B938_RS11835 (B938_11905) comGD 2487621..2488058 (-) 438 WP_015240210.1 competence type IV pilus minor pilin ComGD Machinery gene
  B938_RS11840 (B938_11910) comGC 2488048..2488356 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  B938_RS11845 (B938_11915) comGB 2488361..2489398 (-) 1038 WP_015240211.1 competence type IV pilus assembly protein ComGB Machinery gene
  B938_RS11850 (B938_11920) comGA 2489385..2490455 (-) 1071 WP_015240212.1 competence type IV pilus ATPase ComGA Machinery gene
  B938_RS11855 (B938_11925) - 2490576..2491598 (-) 1023 WP_015240213.1 magnesium transporter CorA family protein -
  B938_RS11860 (B938_11930) - 2491744..2493045 (+) 1302 WP_012117986.1 hemolysin family protein -
  B938_RS11865 (B938_11935) - 2493083..2493913 (-) 831 WP_015240214.1 STAS domain-containing protein -
  B938_RS11875 (B938_11940) - 2494120..2494500 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  B938_RS11880 (B938_11945) - 2494737..2494982 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.81 Da        Isoelectric Point: 9.4784

>NTDB_id=55159 B938_RS11850 WP_015240212.1 2489385..2490455(-) (comGA) [Bacillus velezensis AS43.3]
MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWAYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=55159 B938_RS11850 WP_015240212.1 2489385..2490455(-) (comGA) [Bacillus velezensis AS43.3]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTAATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTAAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCAGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGAGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGCGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment