Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   B938_RS12095 Genome accession   NC_019842
Coordinates   2534323..2535090 (-) Length   255 a.a.
NCBI ID   WP_015240232.1    Uniprot ID   -
Organism   Bacillus velezensis AS43.3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2529323..2540090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS12075 (B938_12155) - 2529525..2530337 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  B938_RS12080 (B938_12160) ccpN 2530363..2531001 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  B938_RS12085 (B938_12165) glyS 2531102..2533141 (-) 2040 WP_015240231.1 glycine--tRNA ligase subunit beta -
  B938_RS12090 (B938_12170) glyQ 2533134..2534021 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  B938_RS12095 (B938_12175) recO 2534323..2535090 (-) 768 WP_015240232.1 DNA repair protein RecO Machinery gene
  B938_RS19405 (B938_12180) - 2535127..2535270 (-) 144 WP_007408286.1 YqzL family protein -
  B938_RS12100 (B938_12185) era 2535425..2536330 (-) 906 WP_007408285.1 GTPase Era -
  B938_RS12105 (B938_12190) - 2536311..2536721 (-) 411 WP_003152976.1 cytidine deaminase -
  B938_RS12110 (B938_12195) - 2536845..2537219 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  B938_RS12115 (B938_12200) ybeY 2537200..2537673 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  B938_RS12120 (B938_12205) - 2537674..2539806 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29294.89 Da        Isoelectric Point: 8.7092

>NTDB_id=55160 B938_RS12095 WP_015240232.1 2534323..2535090(-) (recO) [Bacillus velezensis AS43.3]
MLTKSEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=55160 B938_RS12095 WP_015240232.1 2534323..2535090(-) (recO) [Bacillus velezensis AS43.3]
ATGCTGACTAAAAGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.235

100

0.882

Multiple sequence alignment