Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J5Z97_RS00740 Genome accession   NZ_CP072112
Coordinates   113251..113646 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain M08500     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 108251..118646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z97_RS00710 (J5Z97_00710) - 109116..109425 (+) 310 Protein_89 hypothetical protein -
  J5Z97_RS00715 (J5Z97_00715) proC 109508..110278 (-) 771 WP_023611530.1 pyrroline-5-carboxylate reductase -
  J5Z97_RS00720 (J5Z97_00720) pepA 110326..111393 (-) 1068 WP_023611498.1 glutamyl aminopeptidase -
  J5Z97_RS00725 (J5Z97_00725) - 111858..112139 (+) 282 WP_023611512.1 DUF4651 domain-containing protein -
  J5Z97_RS00730 (J5Z97_00730) - 112139..112456 (+) 318 WP_002987805.1 thioredoxin family protein -
  J5Z97_RS00735 (J5Z97_00735) ytpR 112474..113100 (+) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  J5Z97_RS00740 (J5Z97_00740) ssbA 113251..113646 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  J5Z97_RS00745 (J5Z97_00745) - 113906..114547 (-) 642 WP_023611511.1 deoxynucleoside kinase -
  J5Z97_RS00750 (J5Z97_00750) dusB 114567..115544 (-) 978 WP_023611504.1 tRNA dihydrouridine synthase DusB -
  J5Z97_RS00755 (J5Z97_00755) hslO 115531..116403 (-) 873 WP_012766459.1 Hsp33 family molecular chaperone HslO -
  J5Z97_RS00760 (J5Z97_00760) rofA 116550..118043 (-) 1494 WP_014411814.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=550459 J5Z97_RS00740 WP_003053955.1 113251..113646(+) (ssbA) [Streptococcus pyogenes strain M08500]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=550459 J5Z97_RS00740 WP_003053955.1 113251..113646(+) (ssbA) [Streptococcus pyogenes strain M08500]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACTGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397