Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J5N61_RS01945 Genome accession   NZ_CP071973
Coordinates   417897..419123 (-) Length   408 a.a.
NCBI ID   WP_212387959.1    Uniprot ID   -
Organism   Acinetobacter junii strain INC8271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412897..424123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS01920 (J5N61_01920) - 414232..414558 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  J5N61_RS01925 (J5N61_01925) rlmB 414748..415497 (+) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  J5N61_RS01930 (J5N61_01930) - 415528..416439 (+) 912 WP_004958607.1 DMT family transporter -
  J5N61_RS01935 (J5N61_01935) coaE 416436..417035 (-) 600 WP_004958609.1 dephospho-CoA kinase -
  J5N61_RS01940 (J5N61_01940) pilD 417037..417897 (-) 861 WP_204379161.1 prepilin peptidase Machinery gene
  J5N61_RS01945 (J5N61_01945) pilC 417897..419123 (-) 1227 WP_212387959.1 type II secretion system F family protein Machinery gene
  J5N61_RS01950 (J5N61_01950) pilB 419148..420875 (-) 1728 WP_212387962.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J5N61_RS01955 (J5N61_01955) tpiA 421221..422012 (+) 792 WP_004958617.1 triose-phosphate isomerase -
  J5N61_RS01960 (J5N61_01960) secG 422025..422354 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -
  J5N61_RS01980 (J5N61_01980) rimP 422977..423501 (+) 525 WP_004916844.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45100.48 Da        Isoelectric Point: 9.7372

>NTDB_id=549541 J5N61_RS01945 WP_212387959.1 417897..419123(-) (pilC) [Acinetobacter junii strain INC8271]
MVEKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKNEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFTSFGADLPAFTQMVVNMSKWMQEYWFILIIAIGIFIT
GFLEAKKRSKKFRDTLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNLFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=549541 J5N61_RS01945 WP_212387959.1 417897..419123(-) (pilC) [Acinetobacter junii strain INC8271]
ATGGTAGAGAAAAAAGCGCAAATGATGCCTACTTTTGCCTACGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCAAAAGTCACCTTACGTAAACAAGGTGTGACTATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATCACAGTTTTCACACGCCAATTAGCAACA
ATGATGAAAGCGGGTGTGCCATTAGTACAAGGCTTTGAAATTGTTGCAGAAGGATTAGAAAACCCATCCATGCGTGAGGT
CGTATTAGGTTTAAAAAACGAAGTTGAAGGCGGTAATACTTTTGCTGGTGCTTTAAGAAAATACCCTCAATATTTCGACA
ATTTATTTTGTTCACTCGTCGAATCTGGTGAACAATCAGGTGCCCTTGAAACGATGCTAGATCGTGTTGCTGTTTATAAA
GAAAAAAGTGAATTACTCAAACAAAAAATTAAAAAAGCGATGAAATATCCTGCCACTGTTATCGTTGTAGCTGTAATTGT
AACAATCATTCTAATGGTTAAGGTAGTACCCGTTTTCCAAGACCTCTTTACATCCTTTGGAGCTGATCTACCAGCTTTTA
CCCAAATGGTTGTAAATATGTCTAAATGGATGCAAGAGTATTGGTTTATCCTCATTATTGCTATAGGTATTTTTATCACA
GGATTCTTGGAGGCAAAAAAACGTAGTAAAAAGTTTAGAGATACATTGGATAAGCTTGCTCTAAAATTGCCGATTTTTGG
AGATCTTGTATATAAAGCAATTATTGCTCGCTATAGCCGCACTTTAGCTACCACTTTTGCTGCAGGCGTACCATTAATTG
ATGCGCTTACATCCACAGCAGGTGCAACCAATAATGTTGTTTATGAAGAAGCTGTACTTAAAATTAGAGAAGATGTTGCG
ACTGGACAACAGCTCCAATTCGCGATGCGTGTTTCAAACCTCTTCCCTTCGATGGCAATTCAAATGGTTGCAATTGGTGA
AGAGTCTGGCGCTCTTGATTCGATGTTAGATAAAGTCGCAACACACTATGAAAATGAAGTCGACAACGCAGTAGATGGTC
TCACTTCAATGATGGAACCTCTTATTATGGCAATTCTTGGTGTATTAGTAGGCGGTCTCGTTATTGCCATGTATCTACCA
ATCTTCCAGATGGGTTCAGTAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.157

100

0.922
  pilC Acinetobacter baylyi ADP1

86.52

100

0.865
  pilC Pseudomonas stutzeri DSM 10701

60.741

99.265

0.603
  pilC Legionella pneumophila strain ERS1305867

53.808

99.755

0.537
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

41.584

99.02

0.412
  pilC Thermus thermophilus HB27

36.908

98.284

0.363