Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   J5N61_RS01940 Genome accession   NZ_CP071973
Coordinates   417037..417897 (-) Length   286 a.a.
NCBI ID   WP_204379161.1    Uniprot ID   -
Organism   Acinetobacter junii strain INC8271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412037..422897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS01920 (J5N61_01920) - 414232..414558 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  J5N61_RS01925 (J5N61_01925) rlmB 414748..415497 (+) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  J5N61_RS01930 (J5N61_01930) - 415528..416439 (+) 912 WP_004958607.1 DMT family transporter -
  J5N61_RS01935 (J5N61_01935) coaE 416436..417035 (-) 600 WP_004958609.1 dephospho-CoA kinase -
  J5N61_RS01940 (J5N61_01940) pilD 417037..417897 (-) 861 WP_204379161.1 prepilin peptidase Machinery gene
  J5N61_RS01945 (J5N61_01945) pilC 417897..419123 (-) 1227 WP_212387959.1 type II secretion system F family protein Machinery gene
  J5N61_RS01950 (J5N61_01950) pilB 419148..420875 (-) 1728 WP_212387962.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J5N61_RS01955 (J5N61_01955) tpiA 421221..422012 (+) 792 WP_004958617.1 triose-phosphate isomerase -
  J5N61_RS01960 (J5N61_01960) secG 422025..422354 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32004.58 Da        Isoelectric Point: 7.7994

>NTDB_id=549540 J5N61_RS01940 WP_204379161.1 417037..417897(-) (pilD) [Acinetobacter junii strain INC8271]
MQSFFFYFLENPTALYLAVGLISLCIGSFLNVVIFRTPKMMEQQWQQECQMLLHPEQPIIDQSKLTLSQPVSTCPKCQTP
IKWFQNIPLISWLALRGKCGTCQNTISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGVNTFAIYTTASAAIWGYLIGFLCLWIVYFLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=549540 J5N61_RS01940 WP_204379161.1 417037..417897(-) (pilD) [Acinetobacter junii strain INC8271]
ATGCAATCTTTTTTCTTTTACTTCCTTGAAAATCCAACTGCACTTTACCTTGCAGTTGGATTAATCAGTCTGTGCATTGG
CAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAGCAATGGCAGCAAGAATGCCAAATGCTTTTAC
ACCCTGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGTTTCCACCTGTCCTAAGTGTCAAACGCCA
ATTAAATGGTTCCAAAATATTCCTCTTATTAGTTGGTTAGCACTCCGTGGTAAATGTGGCACTTGCCAGAATACAATTAG
CATTCGCTACCCGCTGATTGAACTACTTACTATGATCTGTTCATTGATCGTTGTGGCAGTATTCGGTGCAACAATTCAGA
TGCTGTTCGGCTTAATTCTAACGTGGACACTTATTGCACTCACTTTTATTGATTTTGATACACAATTACTACCTGATCGA
TTTACGCTACCTTTAGCAGCATTAGGTCTAGGTGTTAATACTTTTGCAATCTATACAACGGCTAGTGCTGCGATCTGGGG
CTATTTAATCGGTTTTCTATGTCTTTGGATTGTGTATTTCCTATTTAAAATCATCACCGGCAAAGAAGGCATGGGCTATG
GAGATTTTAAACTGCTTGCCGCCCTTGGTGCATGGATGGGTCCGATGATGTTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGTGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCAAT
TGCTGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.119

100

0.811
  pilD Acinetobacter baumannii D1279779

80.769

100

0.808
  pilD Vibrio cholerae strain A1552

51.736

100

0.521
  pilD Vibrio campbellii strain DS40M4

50.752

93.007

0.472
  pilD Neisseria gonorrhoeae MS11

46.154

95.455

0.441