Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J4H94_RS04715 Genome accession   NZ_CP071899
Coordinates   1008349..1009569 (+) Length   406 a.a.
NCBI ID   WP_133456151.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain TPA3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1003349..1014569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4H94_RS04690 (J4H94_04690) - 1003686..1004522 (-) 837 WP_166082509.1 hypothetical protein -
  J4H94_RS04695 (J4H94_04695) - 1004524..1005333 (-) 810 WP_166082500.1 ABC transporter permease subunit -
  J4H94_RS04700 (J4H94_04700) - 1005549..1006001 (-) 453 WP_133456154.1 hypothetical protein -
  J4H94_RS21570 (J4H94_04705) pilA 1006019..1006204 (-) 186 WP_133456153.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J4H94_RS04710 (J4H94_04710) pilB 1006643..1008346 (+) 1704 WP_208217600.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J4H94_RS04715 (J4H94_04715) pilC 1008349..1009569 (+) 1221 WP_133456151.1 type II secretion system F family protein Machinery gene
  J4H94_RS04720 (J4H94_04720) pilD 1009573..1010439 (+) 867 WP_133456150.1 A24 family peptidase Machinery gene
  J4H94_RS04725 (J4H94_04725) coaE 1010573..1011181 (+) 609 WP_208217601.1 dephospho-CoA kinase -
  J4H94_RS04730 (J4H94_04730) yacG 1011178..1011375 (+) 198 WP_102840588.1 DNA gyrase inhibitor YacG -
  J4H94_RS04735 (J4H94_04735) - 1011400..1012080 (-) 681 WP_102840589.1 energy-coupling factor ABC transporter permease -
  J4H94_RS04740 (J4H94_04740) - 1012119..1013155 (-) 1037 Protein_932 NADP(H)-dependent aldo-keto reductase -
  J4H94_RS04745 (J4H94_04745) rplM 1013598..1014026 (+) 429 WP_063544471.1 50S ribosomal protein L13 -
  J4H94_RS04750 (J4H94_04750) rpsI 1014041..1014433 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44551.54 Da        Isoelectric Point: 9.8649

>NTDB_id=548886 J4H94_RS04715 WP_133456151.1 1008349..1009569(+) (pilC) [Stutzerimonas frequens strain TPA3]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALIKAQLRKQGINPLKVRKKAVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFESVFQGFGAELPAFTMMVVQLSRWLQEWWYIVFFALFVAAFLFK
HAYKRSEKFRDSLDRLLLKLPIVGDILYKSVVARYARTLSTTFAAGVPLVDALDSVAGATGNVVFRNAVAKIRTDVSSGV
QLNFSMRTTGIFPTMAIQMTAIGEESGALDEMLDKLASFYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=548886 J4H94_RS04715 WP_133456151.1 1008349..1009569(+) (pilC) [Stutzerimonas frequens strain TPA3]
ATGGCGGAAAAAGCGTTGAAAACCAGTGTGTTCACCTGGGAAGGCACCGACAGAAAAGGTGGCAAGGTCAAGGGGGAGCT
GGCAGGCCAGAGCCCGGCACTGATCAAGGCGCAGCTCCGCAAGCAGGGTATCAATCCGCTGAAGGTTCGCAAGAAGGCCG
TTTCCTTGTTCGGGGCGGGCAAGAAAATCAAGCCGATGGACATCGCACTGTTCACTCGGCAGATGGCCACCATGATGAAG
GCGGGCGTGCCGCTGCTGCAATCGTTCGACATCATTGGCGAGGGCTTCGATAACCCAAACATGCGCAAGCTGGTCGATGA
GATCAAGCAAGAAGTGGCGGCAGGCAACAGCTTTGCTGGCTCGCTGCGTAAGAAGCCGCAATATTTCGATGACCTGTATT
GCAATTTGGTCGAGTCTGGAGAGCAGTCCGGTGCGCTCGAAACGCTGCTGGACCGTGTTGCAACCTACAAGGAAAAAACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCGATGACCTATCCGATTGCGGTTATCGTGGTGGCAATCATCGTATCGGCGAT
TCTCTTGATTAAGGTGGTCCCTCAGTTCGAAAGTGTATTTCAGGGCTTCGGCGCGGAACTTCCAGCGTTCACCATGATGG
TGGTGCAGTTGTCACGTTGGCTGCAGGAGTGGTGGTATATCGTATTCTTTGCATTGTTCGTTGCTGCCTTTTTGTTCAAG
CATGCATATAAACGGTCGGAAAAGTTTCGTGACTCTCTTGATCGCCTTTTGCTCAAGCTGCCGATCGTTGGTGACATTCT
CTACAAGTCTGTAGTTGCGCGATATGCTCGCACATTGTCCACGACATTCGCGGCTGGTGTGCCCTTGGTTGATGCGTTGG
ACTCAGTGGCAGGTGCCACGGGCAACGTCGTGTTCCGCAATGCAGTAGCGAAGATCCGTACGGACGTATCGTCTGGTGTG
CAGCTCAATTTCTCCATGCGCACGACCGGCATTTTTCCCACCATGGCTATTCAAATGACTGCTATCGGCGAGGAGTCCGG
TGCGTTGGACGAGATGCTCGACAAACTGGCCAGTTTCTATGAGGCGGAGGTCGATAACATGGTGGATAACCTTACGACCC
TGATGGAACCGCTGATCATGGCCGTGCTCGGGGTTCTGGTCGGTGGCTTGATCATCGCGATGTATCTGCCGATCTTCCAG
TTGGGTAGTGTGGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

82.469

99.754

0.823
  pilC Acinetobacter baylyi ADP1

63.547

100

0.635
  pilC Acinetobacter baumannii D1279779

62.469

99.754

0.623
  pilC Legionella pneumophila strain ERS1305867

54.545

97.537

0.532
  pilG Neisseria gonorrhoeae MS11

45.522

99.015

0.451
  pilG Neisseria meningitidis 44/76-A

45.522

99.015

0.451
  pilC Vibrio cholerae strain A1552

43.35

100

0.434
  pilC Vibrio campbellii strain DS40M4

40.75

98.522

0.401