Detailed information NTG0548887

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J4H94_RS04720
• Genome accession: NZ_CP071899
• Coordinates: 1009573..1010439 (+)
• Length: 288 a.a.
• NCBI ID: WP_133456150.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain TPA3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1004573..1015439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4H94_RS04700 (J4H94_04700)	-	1005549..1006001 (-)	453	WP_133456154.1	hypothetical protein	-
J4H94_RS21570 (J4H94_04705)	pilA	1006019..1006204 (-)	186	WP_133456153.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
J4H94_RS04710 (J4H94_04710)	pilB	1006643..1008346 (+)	1704	WP_208217600.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J4H94_RS04715 (J4H94_04715)	pilC	1008349..1009569 (+)	1221	WP_133456151.1	type II secretion system F family protein	Machinery gene
J4H94_RS04720 (J4H94_04720)	pilD	1009573..1010439 (+)	867	WP_133456150.1	A24 family peptidase	Machinery gene
J4H94_RS04725 (J4H94_04725)	coaE	1010573..1011181 (+)	609	WP_208217601.1	dephospho-CoA kinase	-
J4H94_RS04730 (J4H94_04730)	yacG	1011178..1011375 (+)	198	WP_102840588.1	DNA gyrase inhibitor YacG	-
J4H94_RS04735 (J4H94_04735)	-	1011400..1012080 (-)	681	WP_102840589.1	energy-coupling factor ABC transporter permease	-
J4H94_RS04740 (J4H94_04740)	-	1012119..1013155 (-)	1037	Protein_932	NADP(H)-dependent aldo-keto reductase	-
J4H94_RS04745 (J4H94_04745)	rplM	1013598..1014026 (+)	429	WP_063544471.1	50S ribosomal protein L13	-
J4H94_RS04750 (J4H94_04750)	rpsI	1014041..1014433 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
J4H94_RS04755 (J4H94_04755)	petA	1014687..1015280 (+)	594	WP_063544473.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32149.19 Da
• Isoelectric Point: 7.6223

>NTDB_id=548887 J4H94_RS04720 WP_133456150.1 1009573..1010439(+) (pilD) [Stutzerimonas frequens strain TPA3]
MIYELMASHVLAFVLSAAVLGLLVGSFLNVLIYRLPVMMQREWRVQAREFLELPCEPVGERFNLLLPNSRCPHCAHRIRA
WENVPLISWLYLRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAAAMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIVNHFGLFTSLESAVWGAVTGYLSLWSVYWLFKLATGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLKVQRAESGTPIPFGPYLAIAGWIALLWGERITESYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=548887 J4H94_RS04720 WP_133456150.1 1009573..1010439(+) (pilD) [Stutzerimonas frequens strain TPA3]
ATGATCTACGAACTGATGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCAGCAGTGCTCGGTCTGCTGGTTGGCAGTTT
CCTAAACGTCCTCATCTACCGGTTGCCGGTGATGATGCAGCGCGAATGGCGGGTGCAGGCGAGAGAATTTCTTGAGCTGC
CATGCGAACCGGTCGGCGAACGATTCAACCTGTTGCTACCGAATTCGCGCTGTCCGCATTGCGCTCATCGAATCCGCGCA
TGGGAAAACGTTCCGCTGATCAGTTGGCTGTACTTACGTGGCAAGTGTTCATCCTGCCAGGCGCCGATCAGTTGTCGTTA
CCCGTTGGTGGAGCTGGCATGCGGTGTGCTATCCGGATATGTGGCATGGCATTTCGGCTTTTCCTGGCAGGCCGCCGCAA
TGCTATTGCTGACTTGGGGCTTGCTGGCAATGAGCATGATCGATGTCGATCATCAGTTGTTGCCTGACTCGCTCGTACTG
CCCTTGTTGTGGCTGGGGTTGATCGTTAACCACTTCGGCTTGTTCACTTCGCTGGAAAGTGCGGTGTGGGGGGCGGTGAC
GGGTTATCTGAGTCTTTGGTCGGTGTACTGGCTTTTCAAGCTCGCCACCGGCAAAGAGGGCATGGGCTACGGCGACTTCA
AGCTGTTGGCGATGCTTGGGGCCTGGGGTGGTTGGCAGGTATTACCGCTTACCATCCTATTGTCGTCAGTGGTCGGAGCG
GTGCTGGGTTCCATTCTTTTGAAGGTTCAGCGTGCAGAAAGCGGCACGCCCATTCCCTTTGGCCCTTATCTGGCGATCGC
TGGGTGGATTGCGCTTCTCTGGGGTGAGCGGATCACCGAAAGCTATCTGCAGTTCGCCCGTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.77	98.264	0.538
pilD	Vibrio campbellii strain DS40M4	55.311	94.792	0.524
pilD	Acinetobacter baumannii D1279779	51.439	96.528	0.497
pilD	Acinetobacter nosocomialis M2	51.439	96.528	0.497
pilD	Neisseria gonorrhoeae MS11	53.992	91.319	0.493