Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | J4N44_RS13890 | Genome accession | NZ_CP071852 |
| Coordinates | 2937108..2937566 (+) | Length | 152 a.a. |
| NCBI ID | WP_017189133.1 | Uniprot ID | - |
| Organism | Vibrio sp. SCSIO 43155 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2932108..2942566
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4N44_RS13875 (J4N44_13805) | pdhR | 2934140..2934907 (-) | 768 | WP_009699648.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| J4N44_RS13880 (J4N44_13810) | ampD | 2935312..2935863 (-) | 552 | WP_252044564.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| J4N44_RS13885 (J4N44_13815) | nadC | 2935956..2936843 (+) | 888 | WP_074050812.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| J4N44_RS13890 (J4N44_13820) | pilA | 2937108..2937566 (+) | 459 | WP_017189133.1 | pilin | Machinery gene |
| J4N44_RS13895 (J4N44_13825) | pilB | 2937572..2939257 (+) | 1686 | WP_049535467.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| J4N44_RS13900 (J4N44_13830) | pilC | 2939291..2940514 (+) | 1224 | WP_005446256.1 | type II secretion system F family protein | Machinery gene |
| J4N44_RS13905 (J4N44_13835) | pilD | 2940587..2941456 (+) | 870 | WP_005446255.1 | A24 family peptidase | Machinery gene |
| J4N44_RS13910 (J4N44_13840) | coaE | 2941457..2942071 (+) | 615 | WP_017817675.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15777.93 Da Isoelectric Point: 7.7818
>NTDB_id=548369 J4N44_RS13890 WP_017189133.1 2937108..2937566(+) (pilA) [Vibrio sp. SCSIO 43155]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPDGSTANQTEAD
LGVPSTIPSGVIAFSTASSAGGTIKFTFNASGVSNLITSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPDGSTANQTEAD
LGVPSTIPSGVIAFSTASSAGGTIKFTFNASGVSNLITSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
Nucleotide
Download Length: 459 bp
>NTDB_id=548369 J4N44_RS13890 WP_017189133.1 2937108..2937566(+) (pilA) [Vibrio sp. SCSIO 43155]
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATTGTGGTAGCGGTTATTGGTGTTTT
AGCTGCGATTGCAATTCCTCAATATCAAAAATATGTAGCGAAATCAGAAGTCGCATCCGCATTAGCTACATTAACTGGTG
TAAAAACTAACGTTGAAGCTTACGCTGTAGAAAATGGCGCTTTTCCTGATGGTTCAACAGCAAACCAAACAGAAGCAGAT
CTAGGTGTACCGAGCACAATCCCTTCAGGTGTTATCGCATTTTCAACTGCTAGTTCAGCGGGTGGCACTATCAAGTTCAC
GTTCAATGCCTCAGGCGTAAGTAACCTCATCACTAGCAAAAACTTTGAATTGGTTCGTGCTTCTGATGGTACTTGGACAT
GTCAAGGCTCCTCAGCTAGCCCTGTTACAGACGATTTATTACCAAAAAACTGTCGCTAG
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATTGTGGTAGCGGTTATTGGTGTTTT
AGCTGCGATTGCAATTCCTCAATATCAAAAATATGTAGCGAAATCAGAAGTCGCATCCGCATTAGCTACATTAACTGGTG
TAAAAACTAACGTTGAAGCTTACGCTGTAGAAAATGGCGCTTTTCCTGATGGTTCAACAGCAAACCAAACAGAAGCAGAT
CTAGGTGTACCGAGCACAATCCCTTCAGGTGTTATCGCATTTTCAACTGCTAGTTCAGCGGGTGGCACTATCAAGTTCAC
GTTCAATGCCTCAGGCGTAAGTAACCTCATCACTAGCAAAAACTTTGAATTGGTTCGTGCTTCTGATGGTACTTGGACAT
GTCAAGGCTCCTCAGCTAGCCCTGTTACAGACGATTTATTACCAAAAAACTGTCGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
48.077 |
100 |
0.493 |
| pilA | Vibrio cholerae C6706 |
48.077 |
100 |
0.493 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.077 |
100 |
0.493 |
| pilA | Acinetobacter baumannii strain A118 |
46.528 |
94.737 |
0.441 |
| pilA | Pseudomonas aeruginosa PAK |
43.791 |
100 |
0.441 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
46.324 |
89.474 |
0.414 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
33.143 |
100 |
0.382 |
| pilE | Neisseria gonorrhoeae MS11 |
34.783 |
100 |
0.368 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.671 |
96.053 |
0.362 |