Detailed information NTG0548372

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J4N44_RS13905
• Genome accession: NZ_CP071852
• Coordinates: 2940587..2941456 (+)
• Length: 289 a.a.
• NCBI ID: WP_005446255.1
• Uniprot ID: A0A3A1Q6Q3
• Organism: Vibrio sp. SCSIO 43155
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2935587..2946456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N44_RS13885 (J4N44_13815)	nadC	2935956..2936843 (+)	888	WP_074050812.1	carboxylating nicotinate-nucleotide diphosphorylase	-
J4N44_RS13890 (J4N44_13820)	pilA	2937108..2937566 (+)	459	WP_017189133.1	pilin	Machinery gene
J4N44_RS13895 (J4N44_13825)	pilB	2937572..2939257 (+)	1686	WP_049535467.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J4N44_RS13900 (J4N44_13830)	pilC	2939291..2940514 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
J4N44_RS13905 (J4N44_13835)	pilD	2940587..2941456 (+)	870	WP_005446255.1	A24 family peptidase	Machinery gene
J4N44_RS13910 (J4N44_13840)	coaE	2941457..2942071 (+)	615	WP_017817675.1	dephospho-CoA kinase	-
J4N44_RS13915 (J4N44_13845)	zapD	2942099..2942839 (+)	741	WP_005446251.1	cell division protein ZapD	-
J4N44_RS13920 (J4N44_13850)	yacG	2942896..2943096 (+)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
J4N44_RS13925 (J4N44_13855)	rplS	2943463..2943816 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
J4N44_RS13930 (J4N44_13860)	trmD	2943858..2944601 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
J4N44_RS13935 (J4N44_13865)	rimM	2944629..2945177 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
J4N44_RS13940 (J4N44_13870)	rpsP	2945206..2945454 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32536.74 Da
• Isoelectric Point: 7.5422

>NTDB_id=548372 J4N44_RS13905 WP_005446255.1 2940587..2941456(+) (pilD) [Vibrio sp. SCSIO 43155]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=548372 J4N44_RS13905 WP_005446255.1 2940587..2941456(+) (pilD) [Vibrio sp. SCSIO 43155]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGCTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTACCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCCTGTGAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGCCCTTACCTTGCAATTGC
AGGATGGGTGAGCTTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A3A1Q6Q3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.232	100	0.972
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436