Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J4N39_RS01210 Genome accession   NZ_CP071848
Coordinates   251411..252826 (+) Length   471 a.a.
NCBI ID   WP_252021236.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 246411..257826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS01190 (J4N39_01190) pilM 248774..249730 (+) 957 WP_252021228.1 pilus assembly protein PilM -
  J4N39_RS01195 (J4N39_01195) - 249717..250277 (+) 561 WP_252021230.1 PilN domain-containing protein -
  J4N39_RS01200 (J4N39_01200) pilO 250280..250864 (+) 585 WP_252021232.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4N39_RS01205 (J4N39_01205) - 250851..251372 (+) 522 WP_252021234.1 pilus assembly protein PilP -
  J4N39_RS01210 (J4N39_01210) pilQ 251411..252826 (+) 1416 WP_252021236.1 type IV pilus secretin PilQ Machinery gene
  J4N39_RS01215 (J4N39_01215) aroK 253068..253586 (+) 519 WP_252021238.1 shikimate kinase AroK -
  J4N39_RS01220 (J4N39_01220) aroB 253612..254697 (+) 1086 WP_252021240.1 3-dehydroquinate synthase -
  J4N39_RS01225 (J4N39_01225) - 254728..256257 (+) 1530 WP_252021243.1 AAA family ATPase -
  J4N39_RS01230 (J4N39_01230) - 256328..257149 (+) 822 WP_252021245.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 51156.34 Da        Isoelectric Point: 4.3055

>NTDB_id=548275 J4N39_RS01210 WP_252021236.1 251411..252826(+) (pilQ) [Vibrio sp. SCSIO 43136]
MKNAVCWYAWQHYLISFLVLCVPLSAGAATGSKVQPLDENSVPIVLNQAGDKISINFQDIPVRNVLQLIADYNQFNLVVS
DDVGGSVTLKIDDTPWDRVLDIILQLKGLDKRVVGDVVLIAPKQEFELREQKQLKLANQNTKLEPLSTQVIEIEFAKASE
VAEMIGGDGSMSMLSERGSIAVDERTNTLLLRDVEQNVVMIQQIIDDLDIPVKQVQIEARIVTVVEGELEELGVRWGFSS
TNGSVTAGGSIESNLAATGLYSGGGDDEDSSLPIEDFLNVNLGATNANASSIAFQFAKLGSDTLVDLELSALQSENKAEI
ISSPRLITTNKKPAYIEQGTEIPYMESSSSGATTVAFKKAVLSLKVIPQITPDNRMVLDLSVTQDRPGRVVKAGTGEAVT
VETQRIGTQVWLENGETLVLGGIHQQSLSQSVDKVPLLGDLPLLGALFRREYENIGKNELLIFITPKIVVQ

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=548275 J4N39_RS01210 WP_252021236.1 251411..252826(+) (pilQ) [Vibrio sp. SCSIO 43136]
ATGAAAAACGCAGTTTGTTGGTATGCGTGGCAACACTATTTAATTAGTTTTCTGGTCCTGTGTGTGCCGCTTAGTGCGGG
AGCTGCAACAGGTAGTAAAGTCCAGCCATTAGATGAAAACTCGGTACCGATCGTCTTGAACCAAGCCGGGGACAAAATAT
CGATCAACTTTCAAGACATTCCAGTGCGAAATGTGCTGCAGCTGATCGCCGACTACAACCAGTTTAACTTAGTCGTATCA
GATGATGTGGGTGGAAGCGTGACACTCAAGATTGATGATACGCCTTGGGACCGAGTACTTGATATCATTTTGCAGCTCAA
GGGGTTAGATAAACGAGTTGTGGGAGATGTCGTCTTGATTGCGCCTAAACAAGAGTTTGAACTGCGTGAACAAAAGCAGC
TCAAGTTGGCTAACCAGAATACTAAGCTCGAACCGTTAAGTACCCAAGTGATTGAAATAGAGTTTGCTAAAGCCTCAGAA
GTGGCGGAAATGATCGGCGGAGATGGCTCAATGTCCATGCTATCTGAGCGAGGCTCTATCGCCGTAGATGAAAGAACCAA
TACACTTCTACTGCGAGATGTTGAGCAAAACGTGGTCATGATCCAGCAGATCATTGACGATCTCGATATTCCCGTAAAAC
AGGTCCAAATAGAGGCGCGGATCGTTACTGTGGTCGAAGGTGAGCTAGAAGAGCTAGGGGTCCGCTGGGGATTTTCTTCA
ACCAATGGCAGTGTGACCGCAGGTGGTAGTATTGAAAGCAACTTGGCGGCCACTGGCCTTTATTCTGGTGGAGGGGATGA
TGAAGATAGCTCGCTACCGATAGAAGACTTTCTTAACGTAAACCTCGGTGCAACTAACGCCAACGCCTCAAGCATTGCGT
TTCAGTTTGCCAAGCTGGGCTCAGATACCTTGGTCGACCTTGAGCTGTCAGCTCTGCAAAGTGAAAACAAAGCGGAAATT
ATCTCAAGTCCACGTTTGATCACCACCAACAAGAAACCCGCTTATATCGAGCAAGGTACGGAGATTCCTTACATGGAGTC
TTCATCGAGCGGAGCGACCACGGTTGCGTTTAAAAAGGCCGTATTGAGCCTAAAGGTTATCCCACAAATTACCCCAGACA
ATCGCATGGTATTGGACCTGAGTGTGACGCAAGACAGACCCGGTCGAGTGGTTAAGGCGGGCACAGGAGAAGCAGTCACG
GTTGAAACTCAGCGGATCGGTACTCAGGTGTGGCTTGAAAATGGGGAAACCTTGGTGCTCGGCGGTATTCATCAACAGAG
CTTGTCTCAATCAGTCGATAAAGTGCCACTGCTTGGCGATCTACCTTTGTTAGGCGCTCTGTTTCGCCGTGAATATGAAA
ACATTGGCAAAAATGAACTGCTCATTTTCATCACGCCGAAAATTGTTGTGCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(311-469)

Bacterial type II/III secretion system short domain (Secretin_N)

(148-214)

Secretin and TonB N terminus short domain (STN)

(75-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

72.028

91.083

0.656
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

70.805

92.357

0.654
  pilQ Vibrio cholerae strain A1552

70.805

92.357

0.654
  pilQ Legionella pneumophila strain Lp02

47.529

90.234

0.429
  pilQ Legionella pneumophila strain ERS1305867

47.529

90.234

0.429
  comQ Acinetobacter baylyi ADP1

43.046

96.178

0.414
  pilQ Acinetobacter baumannii D1279779

38.923

100

0.399
  pilQ Acinetobacter baumannii strain A118

38.923

100

0.399
  comE Haemophilus influenzae 86-028NP

39.4

99.151

0.391
  comE Haemophilus influenzae Rd KW20

38.758

99.151

0.384
  pilQ Pseudomonas aeruginosa PAK

39.91

94.692

0.378