Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | J4N43_RS11090 | Genome accession | NZ_CP071842 |
| Coordinates | 2398155..2398439 (-) | Length | 94 a.a. |
| NCBI ID | WP_031777211.1 | Uniprot ID | A0AAW6ZWA9 |
| Organism | Vibrio sp. SCSIO 43009 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2393155..2403439
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4N43_RS11065 (J4N43_10980) | - | 2393653..2394867 (+) | 1215 | WP_005384283.1 | pyridoxal phosphate-dependent aminotransferase | - |
| J4N43_RS11070 (J4N43_10985) | yfbR | 2394958..2395542 (+) | 585 | WP_062730721.1 | 5'-deoxynucleotidase | - |
| J4N43_RS11075 (J4N43_10990) | - | 2395558..2396880 (+) | 1323 | WP_062730722.1 | anti-phage deoxyguanosine triphosphatase | - |
| J4N43_RS11080 (J4N43_10995) | - | 2396887..2397501 (-) | 615 | WP_054575199.1 | DTW domain-containing protein | - |
| J4N43_RS11085 (J4N43_11000) | rrtA | 2397505..2398056 (+) | 552 | WP_005382331.1 | rhombosortase | - |
| J4N43_RS11090 (J4N43_11005) | comEA | 2398155..2398439 (-) | 285 | WP_031777211.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| J4N43_RS11095 (J4N43_11010) | ppiD | 2398695..2400554 (-) | 1860 | WP_054575200.1 | peptidylprolyl isomerase | - |
| J4N43_RS11100 (J4N43_11015) | - | 2400756..2401028 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10336.96 Da Isoelectric Point: 5.1423
>NTDB_id=548214 J4N43_RS11090 WP_031777211.1 2398155..2398439(-) (comEA) [Vibrio sp. SCSIO 43009]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=548214 J4N43_RS11090 WP_031777211.1 2398155..2398439(-) (comEA) [Vibrio sp. SCSIO 43009]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
88.298 |
100 |
0.883 |
| comEA | Vibrio campbellii strain DS40M4 |
75.789 |
100 |
0.766 |
| comEA | Vibrio cholerae C6706 |
60.87 |
97.872 |
0.596 |
| comEA | Vibrio cholerae strain A1552 |
60.87 |
97.872 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.617 |
86.17 |
0.436 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.677 |
65.957 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
38.202 |
94.681 |
0.362 |