Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | J4N40_RS11890 | Genome accession | NZ_CP071840 |
| Coordinates | 2453562..2453846 (-) | Length | 94 a.a. |
| NCBI ID | WP_031777211.1 | Uniprot ID | A0AAW6ZWA9 |
| Organism | Vibrio sp. SCSIO 43097 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2448562..2458846
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4N40_RS11865 (J4N40_11740) | - | 2449059..2450273 (+) | 1215 | WP_005384283.1 | pyridoxal phosphate-dependent aminotransferase | - |
| J4N40_RS11870 (J4N40_11745) | yfbR | 2450365..2450949 (+) | 585 | WP_017634778.1 | 5'-deoxynucleotidase | - |
| J4N40_RS11875 (J4N40_11750) | - | 2450965..2452287 (+) | 1323 | WP_017634779.1 | anti-phage deoxyguanosine triphosphatase | - |
| J4N40_RS11880 (J4N40_11755) | - | 2452294..2452908 (-) | 615 | WP_025766956.1 | DTW domain-containing protein | - |
| J4N40_RS11885 (J4N40_11760) | rrtA | 2452912..2453463 (+) | 552 | WP_005382331.1 | rhombosortase | - |
| J4N40_RS11890 (J4N40_11765) | comEA | 2453562..2453846 (-) | 285 | WP_031777211.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| J4N40_RS11895 (J4N40_11770) | ppiD | 2454102..2455961 (-) | 1860 | WP_005382334.1 | peptidylprolyl isomerase | - |
| J4N40_RS11900 (J4N40_11775) | - | 2456163..2456435 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10336.96 Da Isoelectric Point: 5.1423
>NTDB_id=548171 J4N40_RS11890 WP_031777211.1 2453562..2453846(-) (comEA) [Vibrio sp. SCSIO 43097]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=548171 J4N40_RS11890 WP_031777211.1 2453562..2453846(-) (comEA) [Vibrio sp. SCSIO 43097]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
88.298 |
100 |
0.883 |
| comEA | Vibrio campbellii strain DS40M4 |
75.789 |
100 |
0.766 |
| comEA | Vibrio cholerae C6706 |
60.87 |
97.872 |
0.596 |
| comEA | Vibrio cholerae strain A1552 |
60.87 |
97.872 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.617 |
86.17 |
0.436 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.677 |
65.957 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
38.202 |
94.681 |
0.362 |