Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JZM58_RS25510 Genome accession   NZ_CP071797
Coordinates   5739388..5740605 (+) Length   405 a.a.
NCBI ID   WP_207983962.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain YK-310     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5734388..5745605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS25490 (JZM58_25490) - 5735912..5736208 (+) 297 WP_007959599.1 DUF2845 domain-containing protein -
  JZM58_RS25495 (JZM58_25495) - 5736375..5736731 (-) 357 WP_085608680.1 BON domain-containing protein -
  JZM58_RS25500 (JZM58_25500) - 5737042..5737458 (-) 417 WP_011335978.1 pilin -
  JZM58_RS25505 (JZM58_25505) pilB 5737685..5739385 (+) 1701 WP_207983961.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JZM58_RS25510 (JZM58_25510) pilC 5739388..5740605 (+) 1218 WP_207983962.1 type II secretion system F family protein Machinery gene
  JZM58_RS25515 (JZM58_25515) pilD 5740607..5741479 (+) 873 WP_207983963.1 A24 family peptidase Machinery gene
  JZM58_RS25520 (JZM58_25520) coaE 5741476..5742099 (+) 624 WP_207983964.1 dephospho-CoA kinase -
  JZM58_RS25525 (JZM58_25525) yacG 5742096..5742296 (+) 201 WP_011335983.1 DNA gyrase inhibitor YacG -
  JZM58_RS25530 (JZM58_25530) - 5742303..5742518 (-) 216 WP_207983965.1 hypothetical protein -
  JZM58_RS25535 (JZM58_25535) - 5742584..5743273 (-) 690 WP_115079246.1 energy-coupling factor ABC transporter permease -
  JZM58_RS25540 (JZM58_25540) - 5743407..5744033 (+) 627 WP_007959580.1 DUF1780 domain-containing protein -
  JZM58_RS25545 (JZM58_25545) - 5744030..5744557 (+) 528 WP_102686306.1 MOSC domain-containing protein -
  JZM58_RS25550 (JZM58_25550) - 5744609..5744782 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44092.77 Da        Isoelectric Point: 10.1093

>NTDB_id=547838 JZM58_RS25510 WP_207983962.1 5739388..5740605(+) (pilC) [Pseudomonas fluorescens strain YK-310]
MAVKAAKISVYAWEGTDRKGSKVTGELSGQNPALVKAQLRKQGINPGKVRKKSASLLSFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPSAVVLVAAVVTGILLIKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGVLVAGFFGTR
HALKKSQALRDRRDAWFLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVMRIRQDVSTGM
QLNFSMRSTGIFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=547838 JZM58_RS25510 WP_207983962.1 5739388..5740605(+) (pilC) [Pseudomonas fluorescens strain YK-310]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTCTACGCCTGGGAAGGCACGGACCGCAAAGGCAGCAAGGTGACCGGCGAGCT
GAGCGGCCAGAACCCCGCACTGGTCAAGGCCCAATTGCGCAAGCAGGGCATCAACCCGGGCAAGGTACGCAAGAAATCCG
CCTCGTTGCTGAGCTTCGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCACTGTTGCAGTCATTCGACATCATTGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAGGTCGCGGCTGGTAACAGCTTCGCCGCCGCGCTGCGCAAGAAGCCGCAATATTTCGACGAGTTGTACT
GCAACCTGGTGGATGCCGGCGAGCAGTCCGGCGCCCTCGACACCCTGCTGGAGCGGGTCGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCGTCCGCCGTGGTGCTGGTGGCGGCGGTGGTTACCGGCAT
TCTGCTGATCAAGGTGGTGCCGCAGTTTCAGTCGGTGTTCTCTGGCTTCGGTGCCGAATTGCCAGCCTTCACGTTGATGG
TGATCAGCCTGTCCGAATTCATGCAGCAATGGTGGTGGGCGATTCTCGGTGTGCTGGTGGCCGGTTTTTTCGGCACCCGC
CATGCCCTGAAAAAATCCCAGGCCCTGCGCGACCGGCGTGACGCCTGGTTTCTCAAGCTGCCGCTGGTGGGCACGCTGAT
GTACAAGTCCGCTGTGGCGCGGTTTGCCCGGACCCTGTCGACCACCTTCGCAGCCGGTGTGCCGTTGGTTGAAGCGCTGG
ACTCGGTGGCCGGCGCCACCGGCAACGTGGTGTTCAAGCGCGCCGTGATGCGCATCCGCCAGGACGTTTCCACCGGCATG
CAGCTGAATTTCTCAATGCGCTCCACCGGCATATTTCCGAACATGGCGGTGCAGATGACTGCCATTGGCGAAGAGTCCGG
CGCACTGGACGAGATGCTCGACAAGGTCGCGGGTTTCTATGAGGACGAAGTGGACAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTCGGGGTGATCGTCGGCGGTCTGGTAGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.306

100

0.76
  pilC Acinetobacter baumannii D1279779

59.069

100

0.595
  pilC Acinetobacter baylyi ADP1

58.824

100

0.593
  pilC Legionella pneumophila strain ERS1305867

53.75

98.765

0.531
  pilG Neisseria meningitidis 44/76-A

43.35

100

0.435
  pilC Vibrio cholerae strain A1552

44.192

97.778

0.432
  pilG Neisseria gonorrhoeae MS11

43.176

99.506

0.43
  pilC Vibrio campbellii strain DS40M4

41.379

100

0.415
  pilC Thermus thermophilus HB27

38.903

99.012

0.385