Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | JZM58_RS25515 | Genome accession | NZ_CP071797 |
| Coordinates | 5740607..5741479 (+) | Length | 290 a.a. |
| NCBI ID | WP_207983963.1 | Uniprot ID | - |
| Organism | Pseudomonas fluorescens strain YK-310 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5735607..5746479
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JZM58_RS25490 (JZM58_25490) | - | 5735912..5736208 (+) | 297 | WP_007959599.1 | DUF2845 domain-containing protein | - |
| JZM58_RS25495 (JZM58_25495) | - | 5736375..5736731 (-) | 357 | WP_085608680.1 | BON domain-containing protein | - |
| JZM58_RS25500 (JZM58_25500) | - | 5737042..5737458 (-) | 417 | WP_011335978.1 | pilin | - |
| JZM58_RS25505 (JZM58_25505) | pilB | 5737685..5739385 (+) | 1701 | WP_207983961.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JZM58_RS25510 (JZM58_25510) | pilC | 5739388..5740605 (+) | 1218 | WP_207983962.1 | type II secretion system F family protein | Machinery gene |
| JZM58_RS25515 (JZM58_25515) | pilD | 5740607..5741479 (+) | 873 | WP_207983963.1 | A24 family peptidase | Machinery gene |
| JZM58_RS25520 (JZM58_25520) | coaE | 5741476..5742099 (+) | 624 | WP_207983964.1 | dephospho-CoA kinase | - |
| JZM58_RS25525 (JZM58_25525) | yacG | 5742096..5742296 (+) | 201 | WP_011335983.1 | DNA gyrase inhibitor YacG | - |
| JZM58_RS25530 (JZM58_25530) | - | 5742303..5742518 (-) | 216 | WP_207983965.1 | hypothetical protein | - |
| JZM58_RS25535 (JZM58_25535) | - | 5742584..5743273 (-) | 690 | WP_115079246.1 | energy-coupling factor ABC transporter permease | - |
| JZM58_RS25540 (JZM58_25540) | - | 5743407..5744033 (+) | 627 | WP_007959580.1 | DUF1780 domain-containing protein | - |
| JZM58_RS25545 (JZM58_25545) | - | 5744030..5744557 (+) | 528 | WP_102686306.1 | MOSC domain-containing protein | - |
| JZM58_RS25550 (JZM58_25550) | - | 5744609..5744782 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| JZM58_RS25555 (JZM58_25555) | - | 5744849..5746147 (+) | 1299 | WP_085689761.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32144.45 Da Isoelectric Point: 7.9937
>NTDB_id=547839 JZM58_RS25515 WP_207983963.1 5740607..5741479(+) (pilD) [Pseudomonas fluorescens strain YK-310]
MPIDELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYVFLRGSCSSCSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDALWGAVLGYIALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRNQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
MPIDELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYVFLRGSCSSCSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDALWGAVLGYIALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRNQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=547839 JZM58_RS25515 WP_207983963.1 5740607..5741479(+) (pilD) [Pseudomonas fluorescens strain YK-310]
ATGCCTATCGACGAACTCTTCAGTCTCTACCCACTGGCCTTTGTTTTCACCGCCCTGCTGCTCGGGCTCGTGGTCGGCAG
TTTTCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCTCACGATGTGTTGGGGC
TGCCCGGTGAAGCGCCGTTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAACATCCCGGTGTTGAGTTACGTGTTCCTGCGCGGGAGCTGCTCAAGTTGCAGCGCACCGATCAGCAAGCG
CTACCCGCTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAGCATCAGTTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGCTGTTCGTGCCGCTTCACGATGCCCTGTGGGGCGCGGT
GCTGGGCTACATAGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTTCTGGCGCTGCTCGGGGCTTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTCTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGCAACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTCTTCAGTCTCTACCCACTGGCCTTTGTTTTCACCGCCCTGCTGCTCGGGCTCGTGGTCGGCAG
TTTTCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCTCACGATGTGTTGGGGC
TGCCCGGTGAAGCGCCGTTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAACATCCCGGTGTTGAGTTACGTGTTCCTGCGCGGGAGCTGCTCAAGTTGCAGCGCACCGATCAGCAAGCG
CTACCCGCTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAGCATCAGTTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGCTGTTCGTGCCGCTTCACGATGCCCTGTGGGGCGCGGT
GCTGGGCTACATAGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTTCTGGCGCTGCTCGGGGCTTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTCTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGCAACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.482 |
97.241 |
0.51 |
| pilD | Vibrio campbellii strain DS40M4 |
51.773 |
97.241 |
0.503 |
| pilD | Acinetobacter baumannii D1279779 |
48.54 |
94.483 |
0.459 |
| pilD | Acinetobacter nosocomialis M2 |
47.81 |
94.483 |
0.452 |
| pilD | Neisseria gonorrhoeae MS11 |
47.407 |
93.103 |
0.441 |