Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J1M35_RS04170 Genome accession   NZ_CP071796
Coordinates   885837..887060 (-) Length   407 a.a.
NCBI ID   WP_208010014.1    Uniprot ID   A0A975CGS7
Organism   Ottowia testudinis strain 27C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880837..892060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1M35_RS04130 (J1M35_04130) - 880950..881825 (+) 876 WP_208010006.1 ATP-binding protein -
  J1M35_RS04135 (J1M35_04135) - 881947..882411 (+) 465 WP_208010007.1 NUDIX domain-containing protein -
  J1M35_RS04140 (J1M35_04140) - 882479..882823 (+) 345 WP_208010008.1 IS630 transposase-related protein -
  J1M35_RS04145 (J1M35_04145) - 882750..883328 (+) 579 WP_284144052.1 IS630 family transposase -
  J1M35_RS04150 (J1M35_04150) - 883373..883591 (-) 219 WP_208010010.1 DNA gyrase inhibitor YacG -
  J1M35_RS04155 (J1M35_04155) zapD 883588..884343 (-) 756 WP_208010011.1 cell division protein ZapD -
  J1M35_RS04160 (J1M35_04160) coaE 884369..884983 (-) 615 WP_208010012.1 dephospho-CoA kinase -
  J1M35_RS04165 (J1M35_04165) pilD 884995..885837 (-) 843 WP_208010013.1 A24 family peptidase Machinery gene
  J1M35_RS04170 (J1M35_04170) pilC 885837..887060 (-) 1224 WP_208010014.1 type II secretion system F family protein Machinery gene
  J1M35_RS04175 (J1M35_04175) pilB 887099..888838 (-) 1740 WP_208011165.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J1M35_RS04185 (J1M35_04185) - 889084..890013 (-) 930 WP_208011166.1 polyprenyl synthetase family protein -
  J1M35_RS04190 (J1M35_04190) rplU 890269..890598 (+) 330 WP_208010015.1 50S ribosomal protein L21 -
  J1M35_RS04195 (J1M35_04195) rpmA 890605..890865 (+) 261 WP_208010016.1 50S ribosomal protein L27 -
  J1M35_RS04200 (J1M35_04200) cgtA 890950..892017 (+) 1068 WP_208010017.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44640.51 Da        Isoelectric Point: 9.7543

>NTDB_id=547805 J1M35_RS04170 WP_208010014.1 885837..887060(-) (pilC) [Ottowia testudinis strain 27C]
MATQVAGAKSAKEFVFEWEGKDRNGKIVRGETRASGENQVQATLRRQGVFVTKVKKRRMRSGKKIKPKDIAIFTRQLATM
MKAGVPLLQSFDIVARGNPNPSVTKLLNDIRGDIETGTSLSAAFRKYPLYFNSLYCNLVEAGEAAGILESLLDRLATYME
KTEAIKSKIKSALMYPIAVVVVAFVVVAVIMIFVIPAFKEVFSNFGADLPAPTLFVIAMSEFFVQWWWLIFGGLGFGIYF
FMQAWKRNEKMQMVMDRLLLKVPIFGDLIEKSVVARWTRTLSTMFAAGVPLVESLDSVGGASGNSVYKLATDKIQQEVST
GTSLTAAMTNANIFPSMVIQMTAIGEESGALDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVVLGSVIGGIVVSMYLPI
FKLGQVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=547805 J1M35_RS04170 WP_208010014.1 885837..887060(-) (pilC) [Ottowia testudinis strain 27C]
ATGGCAACCCAAGTCGCTGGCGCCAAGAGCGCCAAGGAATTTGTCTTCGAATGGGAAGGCAAGGATCGCAATGGCAAGAT
CGTTCGGGGTGAAACCCGTGCCAGTGGCGAAAACCAAGTGCAGGCCACCTTGCGGCGCCAGGGCGTCTTCGTCACCAAGG
TGAAGAAGCGCCGCATGCGGTCGGGCAAGAAGATCAAACCCAAGGACATTGCGATCTTCACGCGCCAGTTGGCCACCATG
ATGAAGGCCGGCGTGCCGTTGCTGCAGTCGTTCGACATCGTGGCGCGCGGCAACCCGAACCCAAGCGTCACCAAGCTGTT
GAACGATATCCGCGGCGATATCGAGACCGGGACGTCGCTCTCAGCGGCGTTCCGCAAATATCCGCTCTACTTCAACAGTT
TGTACTGCAACCTGGTGGAGGCTGGTGAGGCGGCCGGTATCCTGGAAAGCCTGCTTGACCGGCTGGCCACCTACATGGAG
AAGACGGAAGCGATCAAATCGAAGATCAAATCCGCGCTGATGTATCCGATCGCGGTGGTCGTGGTGGCTTTCGTGGTGGT
CGCTGTGATCATGATTTTCGTGATCCCGGCCTTCAAGGAAGTGTTTTCGAACTTTGGCGCCGATCTTCCCGCGCCCACTT
TGTTCGTCATCGCCATGAGCGAATTCTTCGTCCAATGGTGGTGGCTGATCTTCGGCGGACTGGGCTTTGGCATTTACTTC
TTCATGCAAGCGTGGAAACGCAACGAGAAGATGCAGATGGTCATGGATCGTCTGCTGTTGAAGGTCCCGATCTTTGGCGA
TCTGATCGAAAAATCCGTCGTGGCCCGCTGGACACGGACGCTGTCCACGATGTTTGCGGCCGGTGTGCCTTTGGTCGAAT
CGCTAGATTCCGTGGGGGGCGCCTCCGGCAACTCGGTTTACAAGCTGGCGACAGACAAGATCCAGCAGGAAGTCTCAACC
GGTACCAGCCTCACGGCCGCGATGACCAACGCCAACATCTTTCCCAGCATGGTGATTCAGATGACGGCTATTGGCGAGGA
GTCGGGCGCGCTCGACCACATGCTCGGCAAGGCGGCCGATTTCTACGAAGCCGAGGTCGATGAAATGGTGGCCGGTTTGT
CCAGCCTGATGGAGCCCATCATCATCGTGGTCCTGGGCAGCGTCATCGGCGGCATCGTGGTATCGATGTACCTGCCGATC
TTCAAGCTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.97

98.771

0.553
  pilG Neisseria gonorrhoeae MS11

52.75

98.28

0.518
  pilG Neisseria meningitidis 44/76-A

52.5

98.28

0.516
  pilC Legionella pneumophila strain ERS1305867

52.261

97.789

0.511
  pilC Acinetobacter baylyi ADP1

49.749

97.789

0.486
  pilC Acinetobacter baumannii D1279779

49.874

97.543

0.486
  pilC Vibrio cholerae strain A1552

40.806

97.543

0.398
  pilC Thermus thermophilus HB27

38.119

99.263

0.378
  pilC Vibrio campbellii strain DS40M4

38.596

98.034

0.378