Detailed information NTG0547804

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J1M35_RS04165
• Genome accession: NZ_CP071796
• Coordinates: 884995..885837 (-)
• Length: 280 a.a.
• NCBI ID: WP_208010013.1
• Uniprot ID: A0A975H3S1
• Organism: Ottowia testudinis strain 27C
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 879995..890837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J1M35_RS04130 (J1M35_04130)	-	880950..881825 (+)	876	WP_208010006.1	ATP-binding protein	-
J1M35_RS04135 (J1M35_04135)	-	881947..882411 (+)	465	WP_208010007.1	NUDIX domain-containing protein	-
J1M35_RS04140 (J1M35_04140)	-	882479..882823 (+)	345	WP_208010008.1	IS630 transposase-related protein	-
J1M35_RS04145 (J1M35_04145)	-	882750..883328 (+)	579	WP_284144052.1	IS630 family transposase	-
J1M35_RS04150 (J1M35_04150)	-	883373..883591 (-)	219	WP_208010010.1	DNA gyrase inhibitor YacG	-
J1M35_RS04155 (J1M35_04155)	zapD	883588..884343 (-)	756	WP_208010011.1	cell division protein ZapD	-
J1M35_RS04160 (J1M35_04160)	coaE	884369..884983 (-)	615	WP_208010012.1	dephospho-CoA kinase	-
J1M35_RS04165 (J1M35_04165)	pilD	884995..885837 (-)	843	WP_208010013.1	A24 family peptidase	Machinery gene
J1M35_RS04170 (J1M35_04170)	pilC	885837..887060 (-)	1224	WP_208010014.1	type II secretion system F family protein	Machinery gene
J1M35_RS04175 (J1M35_04175)	pilB	887099..888838 (-)	1740	WP_208011165.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J1M35_RS04185 (J1M35_04185)	-	889084..890013 (-)	930	WP_208011166.1	polyprenyl synthetase family protein	-
J1M35_RS04190 (J1M35_04190)	rplU	890269..890598 (+)	330	WP_208010015.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 280 a.a.
• Molecular weight: 30574.42 Da
• Isoelectric Point: 7.4726

>NTDB_id=547804 J1M35_RS04165 WP_208010013.1 884995..885837(-) (pilD) [Ottowia testudinis strain 27C]
MPEGLWLQIAMGGAFGLLIGSFLNVVIYRLPKMMEREWAAGCAEISGQELAAQEAFNLFVPRSRCQQCGHQIRWYENIPV
LSYLALRGKCSACATPISMRYPLVELVTGALFAWCLWRWGWSWTAAAWCVFVAVLVALTLIDWDTTLLPDDLTLPLLWLG
LIAAALGFSSIPLSDAVWGAVAGYMSLWLIYWAFKLATGKEGMGFGDFKLFAALGAWFGWQALVPIILMASVIGAIVGIA
MKLRSSLREGGVVPFGPFLSMAGLTAMLFGPQAILRVVGL

Nucleotide

• Length: 843 bp

>NTDB_id=547804 J1M35_RS04165 WP_208010013.1 884995..885837(-) (pilD) [Ottowia testudinis strain 27C]
ATGCCGGAAGGGCTTTGGCTGCAGATCGCGATGGGCGGCGCTTTCGGGCTGCTCATTGGCAGCTTCCTGAACGTGGTCAT
CTATCGTTTGCCCAAGATGATGGAGCGCGAGTGGGCAGCCGGATGCGCCGAGATATCGGGCCAGGAGCTGGCCGCCCAGG
AGGCTTTCAATCTGTTCGTGCCACGTTCGCGTTGCCAGCAGTGCGGCCACCAGATCCGCTGGTACGAGAACATTCCTGTC
CTCAGCTACCTTGCCCTGCGCGGTAAATGCTCGGCCTGTGCGACGCCAATCAGCATGCGCTATCCCCTGGTCGAGCTGGT
CACTGGCGCGCTTTTCGCCTGGTGTCTTTGGCGCTGGGGCTGGAGTTGGACGGCTGCAGCCTGGTGCGTGTTCGTGGCCG
TGCTGGTGGCACTGACCCTGATCGACTGGGACACCACCTTATTGCCCGACGACTTGACCTTGCCGCTGCTGTGGCTTGGG
CTGATCGCGGCAGCCCTGGGCTTCTCGAGCATTCCTCTCAGTGACGCGGTATGGGGCGCGGTGGCAGGCTATATGTCCTT
GTGGCTCATCTATTGGGCCTTCAAGCTCGCCACCGGCAAAGAAGGGATGGGCTTTGGCGACTTCAAGCTGTTTGCGGCGC
TGGGGGCCTGGTTTGGTTGGCAGGCTCTGGTGCCGATCATCCTCATGGCGTCGGTCATCGGTGCCATCGTGGGGATTGCG
ATGAAGCTCAGGAGCTCGCTGCGCGAAGGCGGTGTGGTGCCGTTCGGCCCGTTTCTTTCCATGGCCGGCTTGACCGCCAT
GCTCTTCGGTCCGCAAGCCATTTTGCGGGTGGTGGGCCTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-239)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.114	97.5	0.518
pilD	Vibrio cholerae strain A1552	53.137	96.786	0.514
pilD	Neisseria gonorrhoeae MS11	50.584	91.786	0.464
pilD	Acinetobacter baumannii D1279779	47.308	92.857	0.439
pilD	Acinetobacter nosocomialis M2	46.538	92.857	0.432