Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J3R86_RS01505 Genome accession   NZ_CP071589
Coordinates   354828..355331 (+) Length   167 a.a.
NCBI ID   WP_207517765.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 349828..360331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS01475 (J3R86_01475) - 350756..351604 (+) 849 WP_207517759.1 ParB/RepB/Spo0J family partition protein -
  J3R86_RS01480 (J3R86_01480) - 351750..352634 (+) 885 WP_207517760.1 mechanosensitive ion channel family protein -
  J3R86_RS01485 (J3R86_01485) - 352661..352864 (+) 204 WP_207517761.1 DUF951 domain-containing protein -
  J3R86_RS01490 (J3R86_01490) ychF 352876..353973 (+) 1098 WP_207517762.1 redox-regulated ATPase YchF -
  J3R86_RS01495 (J3R86_01495) - 354082..354273 (-) 192 WP_207517763.1 hypothetical protein -
  J3R86_RS01500 (J3R86_01500) rpsF 354510..354806 (+) 297 WP_207517764.1 30S ribosomal protein S6 -
  J3R86_RS01505 (J3R86_01505) ssbA 354828..355331 (+) 504 WP_207517765.1 single-stranded DNA-binding protein Machinery gene
  J3R86_RS01510 (J3R86_01510) rpsR 355382..355624 (+) 243 WP_002464877.1 30S ribosomal protein S18 -
  J3R86_RS01515 (J3R86_01515) - 356531..357100 (+) 570 WP_207517766.1 PepSY domain-containing protein -
  J3R86_RS01520 (J3R86_01520) - 357167..357499 (-) 333 Protein_303 IS3 family transposase -
  J3R86_RS01525 (J3R86_01525) istA 357597..358883 (+) 1287 WP_207516747.1 IS21 family transposase -
  J3R86_RS01530 (J3R86_01530) istB 358876..359640 (+) 765 WP_207516745.1 IS21-like element helper ATPase IstB -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18483.06 Da        Isoelectric Point: 4.9264

>NTDB_id=546715 J3R86_RS01505 WP_207517765.1 354828..355331(+) (ssbA) [Staphylococcus simiae strain 17941E]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQHNGGQRQQNEFQDYGQGFGGQQSGQNNSNNNASNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=546715 J3R86_RS01505 WP_207517765.1 354828..355331(+) (ssbA) [Staphylococcus simiae strain 17941E]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTCAATCGTACTTTTACGAATGCACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTTAATAACTATCTATCAAAAGGCAGCTTAGCTGGTGTAGATGGTCGCTTACAATCTCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAACATAATGGTGGCCAACGTCAACAAAATGAATTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAGGAC
AAAACAATTCGAACAATAACGCATCTAACACTAAACAATCCGATAATCCATTTGCTAATGCTAATGGACCTATCGATATT
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.575
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365