Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   J3R86_RS02165 Genome accession   NZ_CP071589
Coordinates   495743..496297 (+) Length   184 a.a.
NCBI ID   WP_207517858.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 490743..501297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS02140 (J3R86_02140) cysE 491947..492609 (+) 663 WP_207517853.1 serine O-acetyltransferase -
  J3R86_RS02145 (J3R86_02145) cysS 492593..493993 (+) 1401 WP_207517854.1 cysteine--tRNA ligase -
  J3R86_RS02150 (J3R86_02150) - 493986..494390 (+) 405 WP_207517855.1 Mini-ribonuclease 3 -
  J3R86_RS02155 (J3R86_02155) rlmB 494398..495144 (+) 747 WP_207517856.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  J3R86_RS02160 (J3R86_02160) - 495144..495668 (+) 525 WP_207517857.1 NYN domain-containing protein -
  J3R86_RS02165 (J3R86_02165) sigH 495743..496297 (+) 555 WP_207517858.1 sigma-70 family RNA polymerase sigma factor Regulator
  J3R86_RS02170 (J3R86_02170) rpmG 496416..496559 (+) 144 WP_002465110.1 50S ribosomal protein L33 -
  J3R86_RS02175 (J3R86_02175) secE 496612..496794 (+) 183 WP_002465109.1 preprotein translocase subunit SecE -
  J3R86_RS02180 (J3R86_02180) nusG 496807..497355 (+) 549 WP_207517859.1 transcription termination/antitermination protein NusG -
  J3R86_RS02185 (J3R86_02185) rplK 497536..497958 (+) 423 WP_207517860.1 50S ribosomal protein L11 -
  J3R86_RS02190 (J3R86_02190) rplA 498164..498859 (+) 696 WP_207517861.1 50S ribosomal protein L1 -
  J3R86_RS02195 (J3R86_02195) rplJ 499128..499628 (+) 501 WP_002465105.1 50S ribosomal protein L10 -
  J3R86_RS02200 (J3R86_02200) rplL 499670..500038 (+) 369 WP_002465104.1 50S ribosomal protein L7/L12 -
  J3R86_RS02205 (J3R86_02205) - 500220..500828 (+) 609 WP_207517862.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 22199.59 Da        Isoelectric Point: 9.5373

>NTDB_id=546718 J3R86_RS02165 WP_207517858.1 495743..496297(+) (sigH) [Staphylococcus simiae strain 17941E]
MTYQFSNNSNDKQHLDTSTYFNDLLKQLHPTIMSRIMKMRINDCDKEDLYQEVIIRIYKATKTFDFNGKQPFNHYVQCVI
SSVKYDYLRKYLAITRRTESLINEYRVKYSNHSLYKETELSCLYKIQLTELQRQFRHLSIFEKEVMTLVCQYYSPKEIAT
ILNVSDKKVYNAIQRSKQKIKTYC

Nucleotide


Download         Length: 555 bp        

>NTDB_id=546718 J3R86_RS02165 WP_207517858.1 495743..496297(+) (sigH) [Staphylococcus simiae strain 17941E]
GTGACATATCAATTTTCAAATAACTCTAATGATAAACAGCATCTAGATACATCAACATACTTTAACGACTTATTAAAACA
ATTGCATCCGACAATTATGAGTAGAATCATGAAGATGAGAATTAACGATTGTGATAAAGAGGATTTATATCAAGAGGTAA
TCATTAGAATCTATAAAGCAACAAAGACGTTTGATTTTAATGGTAAGCAGCCATTTAATCATTATGTACAATGCGTTATA
AGTTCAGTGAAATATGATTATTTACGTAAATATTTAGCAATCACTAGAAGGACTGAAAGCTTAATCAACGAATATAGAGT
AAAATATAGTAATCATTCACTATATAAAGAAACAGAATTAAGTTGTCTCTACAAAATACAATTAACAGAACTACAAAGGC
AATTTAGACATTTAAGTATATTTGAAAAAGAAGTAATGACGCTAGTATGTCAATATTATAGTCCTAAAGAAATTGCTACA
ATACTCAATGTTAGTGATAAAAAAGTATACAATGCAATACAAAGAAGTAAACAAAAAATTAAAACATATTGTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(24-90)

Sigma-70, region 4 (Sigma70_r4_2)

(130-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

50.549

98.913

0.5
  sigH Staphylococcus aureus N315

50.562

96.739

0.489