Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J3R86_RS02125 Genome accession   NZ_CP071589
Coordinates   487073..488437 (+) Length   454 a.a.
NCBI ID   WP_207517850.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 482073..493437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS02110 (J3R86_02110) - 482474..483025 (+) 552 WP_207517847.1 UvrB/UvrC motif-containing protein -
  J3R86_RS02115 (J3R86_02115) - 483030..484037 (+) 1008 WP_207517848.1 protein arginine kinase -
  J3R86_RS02120 (J3R86_02120) - 484051..486501 (+) 2451 WP_207517849.1 ATP-dependent Clp protease ATP-binding subunit -
  J3R86_RS02125 (J3R86_02125) radA 487073..488437 (+) 1365 WP_207517850.1 DNA repair protein RadA Machinery gene
  J3R86_RS02130 (J3R86_02130) - 488462..489520 (+) 1059 WP_207517851.1 PIN/TRAM domain-containing protein -
  J3R86_RS02135 (J3R86_02135) gltX 489912..491366 (+) 1455 WP_207517852.1 glutamate--tRNA ligase -
  J3R86_RS02140 (J3R86_02140) cysE 491947..492609 (+) 663 WP_207517853.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49798.17 Da        Isoelectric Point: 6.7205

>NTDB_id=546717 J3R86_RS02125 WP_207517850.1 487073..488437(+) (radA) [Staphylococcus simiae strain 17941E]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEKASNPKHGVKTKEVAGKVQKLNSIHHESTPRILTESAEFNRV
LGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQKKNVLYITGEESLNQTKLRADRLDEDSSELQVLAETDLEVIYQTVK
EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSANVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKNNIGGWSFPEGIQVIGVTSVHEALSFALHS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=546717 J3R86_RS02125 WP_207517850.1 487073..488437(+) (radA) [Staphylococcus simiae strain 17941E]
TTGGCCAAGAAAAAAGTGATTTTCGAATGTATGGCTTGCGGATATCAATCACCAAAATGGATGGGTAAATGTCCAAACTG
TGGTGGTTGGAATCAAATGGAAGAAATTGTTGAAAAAGCATCTAATCCCAAACATGGTGTGAAAACAAAAGAAGTTGCAG
GCAAAGTACAAAAATTAAATAGTATTCATCATGAATCAACGCCTAGAATATTAACTGAATCAGCGGAATTCAACCGCGTG
CTAGGTGGAGGTATTGTTAATGGTTCTCTAGTACTAATTGGAGGAGATCCTGGTATTGGGAAATCAACATTATTACTTCA
AATTTGTGCATCATTATCACAAAAGAAAAATGTGTTATATATAACAGGTGAGGAATCATTAAATCAAACTAAATTACGAG
CTGATCGTTTAGATGAAGATTCAAGTGAATTACAAGTTTTAGCTGAAACAGACTTAGAAGTAATTTATCAAACAGTGAAA
GAAGAACAACCAGATTTATTAGTTGTAGACTCTATTCAAACTATTTATCATCCGGAAATTTCATCAGCACCTGGCTCGGT
TTCACAAGTGAGAGAGAGTACGCAAAGTTTAATGAATATTGCCAAACAAATGAACATTGCAACATTCATTGTTGGTCATG
TTACGAAAGAAGGACAAATTGCTGGTCCACGTTTATTAGAGCATATGGTTGATACCGTTTTATATTTTGAAGGTGATGAA
CATCATGCATATAGAATTCTACGAGCAGTAAAAAATCGTTTTGGTTCAACTAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTGAAAGGCGTCAATAACCCATCTGAGATGTTTTTAGAAGAACGTTCAGCTAATGTACCAGGATCAACAATAG
TAGCAACAATGGAAGGTACAAGACCATTACTTATTGAAGTTCAAGCTTTAGTTACACCAACGACTTTTAATAATCCAAGA
AGAATGGCAACAGGAATAGATCATAATAGGCTTAGTTTATTAATGGCAGTACTTGAAAAAAAGGAAAACTATTTATTACA
ACAACAAGATGCTTATATTAAAGTTGCCGGCGGAGTTAAATTAACAGAACCTGCCGTTGATTTAAGCGTGATTGTAGCGA
CAGCATCTAGTTTTAAAGATAAAGCTGTAGATGGTTTAGACTGTTATATTGGAGAAGTTGGTTTGACTGGAGAAGTTAGA
AGGGTTTCACGTATAGAACAACGTGTACAAGAAGCAGCGAAGCTTGGATTTAAGAGAGTAATTATACCTAAAAATAATAT
TGGGGGCTGGTCATTTCCAGAAGGGATACAAGTTATTGGCGTAACATCGGTTCATGAAGCATTATCATTTGCCCTACATT
CATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.231

100

0.67
  radA Streptococcus pneumoniae Rx1

61.607

98.678

0.608
  radA Streptococcus pneumoniae D39

61.607

98.678

0.608
  radA Streptococcus pneumoniae R6

61.607

98.678

0.608
  radA Streptococcus pneumoniae TIGR4

61.607

98.678

0.608
  radA Streptococcus mitis NCTC 12261

61.607

98.678

0.608
  radA Streptococcus mitis SK321

61.607

98.678

0.608