Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LO013_RS01980 Genome accession   NZ_CP087325
Coordinates   418398..418838 (+) Length   146 a.a.
NCBI ID   WP_258578340.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413398..423838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS01960 - 414791..415678 (+) 888 WP_004833668.1 metal-dependent hydrolase -
  LO013_RS01965 - 415809..416399 (+) 591 WP_000846931.1 LemA family protein -
  LO013_RS01970 - 416421..417503 (+) 1083 WP_001246384.1 YgcG family protein -
  LO013_RS01975 - 417497..418057 (+) 561 WP_002125582.1 TPM domain-containing protein -
  LO013_RS01980 pilA 418398..418838 (+) 441 WP_258578340.1 type IV pilin protein Machinery gene
  LO013_RS01985 - 419110..419499 (-) 390 WP_002125552.1 type II toxin-antitoxin system VapC family toxin -
  LO013_RS01990 vapB 419511..419738 (-) 228 WP_002125542.1 type II toxin-antitoxin system VapB family antitoxin -
  LO013_RS01995 - 419891..421519 (+) 1629 WP_025467250.1 PglL family O-oligosaccharyltransferase -
  LO013_RS02000 bfr 421562..422026 (-) 465 WP_000678123.1 bacterioferritin -
  LO013_RS02005 - 422271..422465 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  LO013_RS02010 - 422675..423058 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14803.00 Da        Isoelectric Point: 7.5871

>NTDB_id=545153 LO013_RS01980 WP_258578340.1 418398..418838(+) (pilA) [Acinetobacter baumannii strain OC073]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSKASAALADIASLKTGYETWYSENGETGLNLAAVGGQTPTGNCS
IVAVNPPAAGAPSATTDAIKCTINAPGRLASTAGTAVSIQFDRSATGLFSCTTTNMVADFKPKGCV

Nucleotide


Download         Length: 441 bp        

>NTDB_id=545153 LO013_RS01980 WP_258578340.1 418398..418838(+) (pilA) [Acinetobacter baumannii strain OC073]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATCATCGGTATTTTGGCGGCAATTGCGAT
TCCTGCTTATCAAAACTATATTGCAAAGTCAAAAGCTTCTGCTGCTTTAGCTGATATTGCTTCATTAAAAACAGGTTATG
AAACTTGGTATAGTGAAAATGGTGAGACAGGCTTAAATTTAGCAGCTGTTGGTGGTCAAACGCCAACTGGGAATTGTTCT
ATTGTAGCAGTAAATCCTCCAGCTGCTGGTGCTCCCTCTGCTACAACAGATGCAATTAAATGTACTATTAATGCTCCTGG
ACGTTTAGCTAGTACTGCTGGTACTGCCGTTTCTATTCAGTTTGATCGCTCAGCTACAGGTTTATTCTCATGTACTACTA
CAAACATGGTTGCAGACTTTAAGCCAAAAGGTTGTGTATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-145)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.295

100

0.452
  pilA Vibrio cholerae strain A1552

44.295

100

0.452
  pilA Vibrio cholerae C6706

44.295

100

0.452
  pilA Acinetobacter baumannii strain A118

44.828

99.315

0.445
  pilA Pseudomonas aeruginosa PAK

41.667

100

0.445
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.523

100

0.425
  pilA2 Legionella pneumophila str. Paris

39.216

100

0.411
  pilA2 Legionella pneumophila strain ERS1305867

38.562

100

0.404
  pilA Acinetobacter nosocomialis M2

41.429

95.89

0.397
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.415

100

0.377