Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JZX84_RS03825 Genome accession   NZ_CP071300
Coordinates   735985..736401 (+) Length   138 a.a.
NCBI ID   WP_206888570.1    Uniprot ID   -
Organism   Lactococcus sp. LG592     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 730985..741401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX84_RS03780 (JZX84_03780) - 731509..731727 (+) 219 WP_206888562.1 hypothetical protein -
  JZX84_RS03785 (JZX84_03785) - 731739..731975 (+) 237 WP_206889272.1 AlpA family transcriptional regulator -
  JZX84_RS03790 (JZX84_03790) - 731991..732707 (+) 717 WP_206888564.1 ORF6C domain-containing protein -
  JZX84_RS03795 (JZX84_03795) - 732732..732881 (+) 150 WP_019299076.1 hypothetical protein -
  JZX84_RS03800 (JZX84_03800) - 732971..733534 (-) 564 WP_206888566.1 hypothetical protein -
  JZX84_RS03805 (JZX84_03805) - 733700..734098 (+) 399 WP_206888568.1 hypothetical protein -
  JZX84_RS03810 (JZX84_03810) - 734086..734487 (+) 402 WP_242531357.1 DUF1071 domain-containing protein -
  JZX84_RS10880 - 735720..735785 (+) 66 Protein_700 DUF1071 domain-containing protein -
  JZX84_RS10740 - 735858..735995 (+) 138 WP_242531358.1 translation initiation factor -
  JZX84_RS03825 (JZX84_03825) ssb 735985..736401 (+) 417 WP_206888570.1 single-stranded DNA-binding protein Machinery gene
  JZX84_RS03830 (JZX84_03830) - 736499..736729 (+) 231 WP_206888571.1 helix-turn-helix domain-containing protein -
  JZX84_RS03835 (JZX84_03835) - 736729..737526 (+) 798 WP_206888573.1 phage replisome organiser protein -
  JZX84_RS03840 (JZX84_03840) - 737523..738248 (+) 726 WP_019291316.1 hypothetical protein -
  JZX84_RS03845 (JZX84_03845) - 738251..738400 (+) 150 WP_019291315.1 hypothetical protein -
  JZX84_RS03850 (JZX84_03850) - 738397..738801 (+) 405 WP_206888575.1 RusA family crossover junction endodeoxyribonuclease -
  JZX84_RS03855 (JZX84_03855) - 738788..739027 (+) 240 WP_206888578.1 DUF1031 family protein -
  JZX84_RS03860 (JZX84_03860) dut 739165..739584 (+) 420 WP_206889159.1 dUTP diphosphatase -
  JZX84_RS03865 (JZX84_03865) - 739584..739868 (+) 285 WP_206888581.1 hypothetical protein -
  JZX84_RS03870 (JZX84_03870) - 739868..740188 (+) 321 WP_206888583.1 hypothetical protein -
  JZX84_RS03875 (JZX84_03875) - 740185..740865 (+) 681 WP_206888585.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15594.53 Da        Isoelectric Point: 6.3890

>NTDB_id=544765 JZX84_RS03825 WP_206888570.1 735985..736401(+) (ssb) [Lactococcus sp. LG592]
MINNVVLVGRIVREPELRYTPQNTAVATFTLAVNRRFKNAQGEREADFINCVIWRQPAENLANWAKKGTLVGITGSIQVR
NYENKEGQRVYVTEVLADNFQMLESNSNKTEKGKTKSNQDKDPFAGSPMEVSDDDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=544765 JZX84_RS03825 WP_206888570.1 735985..736401(+) (ssb) [Lactococcus sp. LG592]
ATGATAAATAATGTTGTGTTGGTAGGACGTATTGTCCGTGAACCAGAATTAAGATATACGCCACAGAATACGGCAGTAGC
TACTTTCACTTTAGCAGTAAATCGCCGTTTTAAAAATGCTCAGGGTGAACGAGAAGCAGATTTTATAAACTGTGTTATCT
GGAGACAGCCCGCTGAAAACTTAGCAAATTGGGCAAAAAAAGGAACTTTAGTTGGTATTACTGGAAGTATTCAAGTGAGA
AATTATGAGAACAAGGAAGGTCAACGTGTTTATGTAACAGAAGTATTGGCTGATAACTTTCAAATGCTAGAAAGTAATTC
AAATAAAACAGAAAAAGGGAAAACTAAATCTAATCAAGATAAAGATCCATTTGCAGGTTCACCAATGGAAGTCTCAGATG
ATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.645
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.581

100

0.63
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

75.362

0.442
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.203

100

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.754

100

0.428
  ssbB/cilA Streptococcus mitis NCTC 12261

42.029

100

0.42
  ssbB/cilA Streptococcus pneumoniae Rx1

42.029

100

0.42
  ssbB/cilA Streptococcus pneumoniae D39

42.029

100

0.42
  ssbB/cilA Streptococcus pneumoniae R6

42.029

100

0.42
  ssbB/cilA Streptococcus mitis SK321

42.029

100

0.42
  ssbA Streptococcus mutans UA159

41.304

100

0.413