Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   J0J36_RS00650 Genome accession   NZ_CP071293
Coordinates   135617..135922 (+) Length   101 a.a.
NCBI ID   WP_153924350.1    Uniprot ID   -
Organism   Lactococcus sp. LG1074     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 130617..140922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J36_RS00630 (J0J36_00630) guaB 131727..133208 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  J0J36_RS00635 (J0J36_00635) rpsU 133334..133510 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  J0J36_RS00640 (J0J36_00640) comGA 133696..134640 (+) 945 WP_019291447.1 competence type IV pilus ATPase ComGA Machinery gene
  J0J36_RS00645 (J0J36_00645) comGB 134579..135598 (+) 1020 WP_255566838.1 competence type IV pilus assembly protein ComGB Machinery gene
  J0J36_RS00650 (J0J36_00650) comYC 135617..135922 (+) 306 WP_153924350.1 competence type IV pilus major pilin ComGC Machinery gene
  J0J36_RS00655 (J0J36_00655) comGD 135897..136313 (+) 417 WP_019291446.1 competence type IV pilus minor pilin ComGD Machinery gene
  J0J36_RS00660 (J0J36_00660) comGE 136345..136578 (+) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  J0J36_RS00665 (J0J36_00665) comGF 136559..136999 (+) 441 WP_019291444.1 competence type IV pilus minor pilin ComGF -
  J0J36_RS00670 (J0J36_00670) - 137231..138076 (+) 846 WP_019291443.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  J0J36_RS00675 (J0J36_00675) - 138147..139031 (-) 885 WP_019291442.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11310.26 Da        Isoelectric Point: 9.9072

>NTDB_id=544652 J0J36_RS00650 WP_153924350.1 135617..135922(+) (comYC) [Lactococcus sp. LG1074]
MKKKRLKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPNLGKLVSDGLITQK
QADSYNDYYTKNPNAKCNVSN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=544652 J0J36_RS00650 WP_153924350.1 135617..135922(+) (comYC) [Lactococcus sp. LG1074]
ATGAAAAAAAAGAGACTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTGTTACTTTTATT
GTTTGTCCCAAATTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAGGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAACTTAGGGAAGCTTGTCTCCGACGGTTTAATTACGCAAAAA
CAAGCCGATAGCTACAATGATTATTATACCAAGAACCCTAATGCAAAATGTAATGTATCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

63.366

100

0.634
  comYC Streptococcus mutans UA159

63.366

100

0.634
  comGC/cglC Streptococcus mitis SK321

61.386

100

0.614
  comGC Lactococcus lactis subsp. cremoris KW2

61

99.01

0.604
  comGC/cglC Streptococcus pneumoniae Rx1

57.426

100

0.574
  comGC/cglC Streptococcus pneumoniae D39

57.426

100

0.574
  comGC/cglC Streptococcus pneumoniae TIGR4

57.426

100

0.574
  comGC/cglC Streptococcus pneumoniae R6

57.426

100

0.574
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

56.79

80.198

0.455
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396