Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JW886_RS00365 Genome accession   NZ_CP070872
Coordinates   58345..59328 (-) Length   327 a.a.
NCBI ID   WP_205872028.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL004     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53345..64328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS00325 (JW886_00325) - 54249..55091 (-) 843 WP_075525594.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  JW886_RS00330 (JW886_00330) - 55107..55559 (-) 453 WP_200407576.1 zinc-dependent MarR family transcriptional regulator -
  JW886_RS00335 (JW886_00335) comGG 55638..55949 (-) 312 WP_205872025.1 competence type IV pilus minor pilin ComGG -
  JW886_RS00340 (JW886_00340) comGF 55961..56392 (-) 432 WP_241003773.1 competence type IV pilus minor pilin ComGF Machinery gene
  JW886_RS00345 (JW886_00345) comGE 56373..56672 (-) 300 WP_205872026.1 competence type IV pilus minor pilin ComGE Machinery gene
  JW886_RS00350 (JW886_00350) comGD 56644..57087 (-) 444 WP_241003774.1 competence type IV pilus minor pilin ComGD Machinery gene
  JW886_RS00355 (JW886_00355) comGC 57035..57391 (-) 357 WP_420844222.1 competence type IV pilus major pilin ComGC Machinery gene
  JW886_RS00360 (JW886_00360) comGB 57405..58421 (-) 1017 WP_205872463.1 competence type IV pilus assembly protein ComGB Machinery gene
  JW886_RS00365 (JW886_00365) comGA 58345..59328 (-) 984 WP_205872028.1 competence type IV pilus ATPase ComGA Machinery gene
  JW886_RS00370 (JW886_00370) - 59421..64328 (-) 4908 WP_205872029.1 PolC-type DNA polymerase III -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37334.59 Da        Isoelectric Point: 6.4201

>NTDB_id=541189 JW886_RS00365 WP_205872028.1 58345..59328(-) (comGA) [Lactococcus taiwanensis strain K_LL004]
MIQEKAKSIIKQAVERGVTDLYLQGSLTHYDLYFRNLNSKVFTEELALETGLALIAHFKFCAGMNVGEKRRTQLGACWYQ
FGTESRRLRLSSVGDFEGNESLVIRFLHEPKEQLEFWFEAEKLFKQMNFRRGLYLFAGPVGSGKTSLMTNWANRAFDSGQ
VMTVEDPVEIVVSKFVQLQVNDLIGNDYEALIKLSLRHRPDLLIVGEIRDEKTARAVLRASLTGYTVFSTIHAPSISAVW
TRLLEFGISEWELKSCLQAVVYQRLINGKGMVEIAKEGFEHWSHEKWNWQIEELVTQGALDRDEGEREKIAPSQTGETHP
THGKSIE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=541189 JW886_RS00365 WP_205872028.1 58345..59328(-) (comGA) [Lactococcus taiwanensis strain K_LL004]
ATGATACAAGAAAAAGCAAAAAGCATTATCAAACAAGCTGTTGAAAGAGGTGTGACAGACCTCTATTTACAAGGGAGTTT
GACGCATTATGACTTATACTTTAGAAATTTAAATTCTAAAGTATTTACAGAGGAGTTAGCTCTAGAAACAGGCTTGGCAC
TGATTGCTCATTTTAAGTTTTGTGCGGGGATGAATGTCGGAGAAAAACGGCGAACACAGTTAGGTGCTTGTTGGTACCAA
TTTGGAACGGAATCAAGACGGCTACGCCTCTCTTCAGTAGGTGACTTCGAAGGAAACGAATCGCTAGTGATTAGATTTTT
ACATGAGCCTAAAGAGCAACTTGAATTCTGGTTTGAAGCTGAAAAACTTTTCAAACAGATGAATTTTAGGCGGGGGTTAT
ATCTTTTTGCTGGACCTGTAGGGTCTGGTAAAACATCCCTGATGACTAATTGGGCTAATCGTGCTTTTGATAGTGGACAG
GTAATGACTGTGGAAGATCCTGTGGAAATTGTTGTATCAAAATTTGTGCAATTGCAAGTCAATGATCTAATAGGCAATGA
TTATGAAGCATTAATCAAGCTTTCCCTGCGTCACCGTCCTGATCTTTTGATTGTAGGAGAAATCCGTGATGAAAAAACAG
CACGCGCAGTTCTTCGAGCGAGTTTAACAGGATATACAGTTTTTTCGACAATTCATGCCCCCTCAATATCAGCTGTCTGG
ACACGCCTCTTAGAATTTGGTATTTCAGAATGGGAATTAAAAAGTTGTCTGCAAGCAGTTGTTTATCAACGTTTAATAAA
TGGAAAAGGGATGGTGGAAATTGCAAAAGAAGGCTTTGAACACTGGTCACATGAGAAATGGAATTGGCAGATTGAAGAAT
TGGTTACACAAGGAGCTCTTGACAGAGATGAAGGTGAGCGGGAAAAAATTGCCCCTTCCCAAACAGGTGAAACTCATCCA
ACTCATGGGAAATCTATTGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Lactococcus lactis subsp. cremoris KW2

60.061

100

0.602
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

53.822

96.024

0.517
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

53.822

96.024

0.517
  comGA/cglA/cilD Streptococcus pneumoniae D39

53.822

96.024

0.517
  comGA/cglA/cilD Streptococcus pneumoniae R6

53.822

96.024

0.517
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

53.822

96.024

0.517
  comYA Streptococcus gordonii str. Challis substr. CH1

50.47

97.554

0.492
  comYA Streptococcus mutans UA159

50.804

95.107

0.483
  comYA Streptococcus mutans UA140

50.804

95.107

0.483
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

50.645

94.801

0.48