NTDB

Overview

Name	comGF	Type	Machinery gene
Locus tag	JW886_RS00340	Genome accession	NZ_CP070872
Coordinates	55961..56392 (-)	Length	143 a.a.
NCBI ID	WP_241003773.1	Uniprot ID	-
Organism	Lactococcus taiwanensis strain K_LL004
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 50961..61392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JW886_RS00310 (JW886_00310)	-	51555..52439 (+)	885	WP_205872023.1	RluA family pseudouridine synthase	-
JW886_RS00315 (JW886_00315)	-	52500..53309 (-)	810	WP_205872024.1	metal ABC transporter permease	-
JW886_RS00320 (JW886_00320)	-	53302..54039 (-)	738	WP_200407574.1	metal ABC transporter ATP-binding protein	-
JW886_RS00325 (JW886_00325)	-	54249..55091 (-)	843	WP_075525594.1	metal ABC transporter solute-binding protein, Zn/Mn family	-
JW886_RS00330 (JW886_00330)	-	55107..55559 (-)	453	WP_200407576.1	zinc-dependent MarR family transcriptional regulator	-
JW886_RS00335 (JW886_00335)	comGG	55638..55949 (-)	312	WP_205872025.1	competence type IV pilus minor pilin ComGG	-
JW886_RS00340 (JW886_00340)	comGF	55961..56392 (-)	432	WP_241003773.1	competence type IV pilus minor pilin ComGF	Machinery gene
JW886_RS00345 (JW886_00345)	comGE	56373..56672 (-)	300	WP_205872026.1	competence type IV pilus minor pilin ComGE	Machinery gene
JW886_RS00350 (JW886_00350)	comGD	56644..57087 (-)	444	WP_241003774.1	competence type IV pilus minor pilin ComGD	Machinery gene
JW886_RS00355 (JW886_00355)	comGC	57035..57391 (-)	357	WP_420844222.1	competence type IV pilus major pilin ComGC	Machinery gene
JW886_RS00360 (JW886_00360)	comGB	57405..58421 (-)	1017	WP_205872463.1	competence type IV pilus assembly protein ComGB	Machinery gene
JW886_RS00365 (JW886_00365)	comGA	58345..59328 (-)	984	WP_205872028.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

Download Length: 143 a.a. Molecular weight: 16374.15 Da Isoelectric Point: 8.4782

                                >NTDB_id=541184 JW886_RS00340 WP_241003773.1 55961..56392(-) (comGF) [Lactococcus taiwanensis strain K_LL004]

MRGHRIRAFTLLECLIALLVLSGSILVINGLTNLLHQQLMSVQVEQTKDWQIFCEQMYAELDGASFDKVEGNFLYVTKNA

KKLRFGLMGDDFRKTSAQGTGYQPMLFGIKDVKIEQEQGLIKMTILFEKEGGRTFVYRFININ

Nucleotide

Download Length: 432 bp

                                >NTDB_id=541184 JW886_RS00340 WP_241003773.1 55961..56392(-) (comGF) [Lactococcus taiwanensis strain K_LL004]

TTGAGAGGACACCGCATTAGAGCTTTTACATTATTAGAATGTTTGATTGCCTTGCTTGTCTTATCTGGATCGATTTTAGT

TATTAACGGCTTAACAAATCTTTTGCATCAGCAACTTATGAGTGTTCAAGTAGAGCAAACGAAAGACTGGCAGATTTTCT

GTGAGCAAATGTATGCTGAACTTGATGGCGCAAGCTTCGACAAGGTAGAGGGTAATTTTTTATATGTGACCAAGAATGCT

AAAAAGCTTCGCTTTGGCTTAATGGGAGATGATTTTCGTAAAACATCGGCACAAGGAACTGGTTACCAGCCTATGCTTTT

TGGAATAAAAGATGTAAAAATAGAACAGGAACAAGGACTTATAAAAATGACGATTTTATTTGAAAAAGAAGGAGGTCGGA

CATTCGTTTACAGATTCATAAATATCAACTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-130)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGF	Lactococcus lactis subsp. cremoris KW2	60.584	95.804	0.58
comYF	Streptococcus mutans UA140	43.75	100	0.441
comYF	Streptococcus mutans UA159	43.056	100	0.434
comGF/cglF	Streptococcus mitis NCTC 12261	42.754	96.503	0.413
comGF/cglF	Streptococcus mitis SK321	42.754	96.503	0.413
comGF/cglF	Streptococcus pneumoniae Rx1	42.029	96.503	0.406
comGF/cglF	Streptococcus pneumoniae D39	42.029	96.503	0.406
comGF/cglF	Streptococcus pneumoniae R6	42.029	96.503	0.406
comGF/cglF	Streptococcus pneumoniae TIGR4	42.029	96.503	0.406

Detailed information NTG0541184