Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JW980_RS15240 Genome accession   NZ_CP070866
Coordinates   3085065..3086291 (+) Length   408 a.a.
NCBI ID   WP_078425747.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3080065..3091291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS15195 (JW980_15195) rimP 3080430..3080954 (-) 525 WP_004692708.1 ribosome maturation factor RimP -
  JW980_RS15225 (JW980_15225) secG 3081908..3082237 (-) 330 WP_004692710.1 preprotein translocase subunit SecG -
  JW980_RS15230 (JW980_15230) tpiA 3082251..3083042 (-) 792 WP_205667273.1 triose-phosphate isomerase -
  JW980_RS15235 (JW980_15235) pilB 3083322..3085034 (+) 1713 WP_205667274.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JW980_RS15240 (JW980_15240) pilC 3085065..3086291 (+) 1227 WP_078425747.1 type II secretion system F family protein Machinery gene
  JW980_RS15245 (JW980_15245) pilD 3086291..3087151 (+) 861 WP_058868793.1 prepilin peptidase Machinery gene
  JW980_RS15250 (JW980_15250) coaE 3087160..3087759 (+) 600 WP_058868792.1 dephospho-CoA kinase -
  JW980_RS15255 (JW980_15255) - 3087773..3088690 (-) 918 WP_205667275.1 DMT family transporter -
  JW980_RS15260 (JW980_15260) rlmB 3088723..3089472 (-) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JW980_RS15265 (JW980_15265) - 3089615..3089938 (-) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44832.27 Da        Isoelectric Point: 9.7992

>NTDB_id=541163 JW980_RS15240 WP_078425747.1 3085065..3086291(+) (pilC) [Acinetobacter johnsonii strain XY27]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=541163 JW980_RS15240 WP_078425747.1 3085065..3086291(+) (pilC) [Acinetobacter johnsonii strain XY27]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTTGCCCTCGCCAAAGTTACTTTGCGTAAACAAGGGATTACTATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATAATGAAGAAAAAAGTGACGACACTGGACATCACGATTTTCACCAGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATCGTGGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGCGAAGTTGAGGGTGGTAATACCTTTGCAGGAGCACTCAAAAAATATCCGCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCACTTGAGACCATGCTGGATCGTGTGGCGGTCTATAAA
GAGAAAAGTGAGTTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATCGT
GACTATTATTTTGATGGTCAAAGTCGTCCCCGTTTTCCAAGAACTATTTAGTTCCTTTGGTGCAGACTTACCCGCATTCA
CCCAAATGGTGGTAAATATGTCCGAATGGATGCAGAAATACTGGTTCATTTTAATTATTGTCGTTGGTGTTGTGATTACA
GCTTTACTCGAAACCAAAAAACGCAGTAAAAAGTTTCGTGACATGTTGGATAAAGCTGCACTGAAAGCCCCGATTTTTGG
TGATTTAGTCTACAAAGCGATTATCGCACGCTATAGCCGTACGCTGTCTACCACCTTTGCTGCGGGTGTACCTTTAATTG
ATGCCCTCGAGTCTACAGCGGGTGCAACCAATAACGTAGTCTATGAAGAAGCCGTGATGAAAATCCGTGAAGATGTCGCA
ACAGGACAACAACTTCAATTCGCAATGCGTGCCACCAATAAATTTCCATCGATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCTCTCGATGCCATGCTGGATAAAGTTGCAACCCACTATGAAAATGAAGTCGATAATGCGGTGGATGGCT
TAACGGCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

81.863

100

0.819
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.912

100

0.419
  pilC Thermus thermophilus HB27

36.908

98.284

0.363