NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	JW980_RS15245	Genome accession	NZ_CP070866
Coordinates	3086291..3087151 (+)	Length	286 a.a.
NCBI ID	WP_058868793.1	Uniprot ID	-
Organism	Acinetobacter johnsonii strain XY27
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3081291..3092151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JW980_RS15225 (JW980_15225)	secG	3081908..3082237 (-)	330	WP_004692710.1	preprotein translocase subunit SecG	-
JW980_RS15230 (JW980_15230)	tpiA	3082251..3083042 (-)	792	WP_205667273.1	triose-phosphate isomerase	-
JW980_RS15235 (JW980_15235)	pilB	3083322..3085034 (+)	1713	WP_205667274.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JW980_RS15240 (JW980_15240)	pilC	3085065..3086291 (+)	1227	WP_078425747.1	type II secretion system F family protein	Machinery gene
JW980_RS15245 (JW980_15245)	pilD	3086291..3087151 (+)	861	WP_058868793.1	prepilin peptidase	Machinery gene
JW980_RS15250 (JW980_15250)	coaE	3087160..3087759 (+)	600	WP_058868792.1	dephospho-CoA kinase	-
JW980_RS15255 (JW980_15255)	-	3087773..3088690 (-)	918	WP_205667275.1	DMT family transporter	-
JW980_RS15260 (JW980_15260)	rlmB	3088723..3089472 (-)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
JW980_RS15265 (JW980_15265)	-	3089615..3089938 (-)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
JW980_RS15270 (JW980_15270)	recN	3090331..3091992 (+)	1662	WP_205667276.1	DNA repair protein RecN	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32001.45 Da Isoelectric Point: 8.0564

                                >NTDB_id=541164 JW980_RS15245 WP_058868793.1 3086291..3087151(+) (pilD) [Acinetobacter johnsonii strain XY27]

MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPQCKSA

IRWYQNVPVMSWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR

YTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

Download Length: 861 bp

                                >NTDB_id=541164 JW980_RS15245 WP_058868793.1 3086291..3087151(+) (pilD) [Acinetobacter johnsonii strain XY27]

ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG

TAGTTTTCTAAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC

ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCCAATGTAAAAGTGCC

ATACGCTGGTATCAAAATGTCCCTGTGATGAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG

TATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGCGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACAATCCAAA

TGTTGTTTGGTCTCGTACTCACTTACATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC

TATACCCTCACCCTTGCAGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCAACGATGGCTATTTGGGG

TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG

GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC

GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCATATATTGCCAT

CGCAGGTTGGATTGCCTTTCTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	79.371	100	0.794
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	53.558	93.357	0.5
pilD	Vibrio campbellii strain DS40M4	52.06	93.357	0.486
pilD	Neisseria gonorrhoeae MS11	45.421	95.455	0.434

Detailed information NTG0541164