Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JW980_RS01565 Genome accession   NZ_CP070866
Coordinates   322932..325010 (+) Length   692 a.a.
NCBI ID   WP_205667517.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317932..330010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS01545 (JW980_01545) pilM 319952..321010 (+) 1059 WP_125273594.1 pilus assembly protein PilM Machinery gene
  JW980_RS01550 (JW980_01550) pilN 321010..321666 (+) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  JW980_RS01555 (JW980_01555) pilO 321663..322385 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  JW980_RS01560 (JW980_01560) pilP 322385..322912 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  JW980_RS01565 (JW980_01565) pilQ 322932..325010 (+) 2079 WP_205667517.1 type IV pilus secretin PilQ Machinery gene
  JW980_RS01570 (JW980_01570) - 325099..325581 (+) 483 WP_207778853.1 shikimate kinase -
  JW980_RS01575 (JW980_01575) aroB 325612..326697 (+) 1086 WP_094148567.1 3-dehydroquinate synthase -
  JW980_RS01580 (JW980_01580) - 326705..327544 (+) 840 WP_094148566.1 hypothetical protein -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75146.24 Da        Isoelectric Point: 5.1275

>NTDB_id=541136 JW980_RS01565 WP_205667517.1 322932..325010(+) (pilQ) [Acinetobacter johnsonii strain XY27]
MNNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSANPTLATPIATARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKGLDKRRNGNVIWIAPVAELIKSEDDEAKAIAQSIKLAPIQTDYIQLSYAKAADVLKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIINDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWS
AQKLNNNPVWGGDFQPSFDLGVDLTTATAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQ
IPYQTWSADTGTTTSFVDANLKLEVTPSITPDGRVQMSLKIEKDTIGRLTAAGYLINTNELETNVLVDDGETVVLGGIFD
DIKQNQYEKVPFFGDLPVVGALFKNNTKSSAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=541136 JW980_RS01565 WP_205667517.1 322932..325010(+) (pilQ) [Acinetobacter johnsonii strain XY27]
ATGAATAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAGGCCTATCAGTTGGAACAGCCATCCCGTTTGGTT
TTAGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGTATTGCAGTGGCAACGGCTGAAGCTAGCACTGTGGATGT
GACTTCAGATGCACAGCGTTCACGTTTAACCGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGCGAATCCAACGCTAGCAACACCTATTGCTACGGCACGTTCAGAGCAAGGTATTTCG
AATATTGGCTTCCAGCGTGGTTCAGACGGTGAAGGCCAAGTTGTGATTGATTTAAAAGGCAGTAATACGCCTGTCGATGT
GAAGCAGCAAGGCAGTAAAATTGTGGTTCGTGTTTTGGGAAATAAAATTCCTGCCCATTTATCACGTCGTCTCAATGTGA
ATGATTTCGCAACGCCGGTATCGACTATTGATGCACAAAACGATGGCAGTAATGGTCTGATCACGATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCAGAAGATAAGCTTACGATTAGTTTAAAGCGTCCTGAAGATAAAAACCCAATGAA
GCCTAAAGCACCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTGGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACCGTACAAGGCAATATTACCTTGCGCCTTAAAGATGTT
CCGTGGGATCAGGCGCTTGATATTATTATGAAAACCAAGGGTTTGGACAAGCGGCGTAATGGTAATGTGATTTGGATTGC
CCCTGTAGCTGAGCTGATCAAATCTGAGGATGATGAAGCCAAAGCCATTGCACAAAGTATTAAACTTGCACCGATTCAAA
CTGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATGTTTTAAAATTGCTAGAAGACTCTCGAAATAGCAAAGGGGCG
GCATCTAACGGTACTGCTGGCACAGACTCACTGGCATTAGAAAGCTTGCTGAGTTCACGTGGTAGTGTGGTTGCTGATTT
ACGAACCAATACTTTAATCATAAACGACACATCACAGAATATTGATAAGATTCGTCGCATGATTGATTTGCTTGATGTTG
CGGTGAAACAGGTGATGGTTGAAGCCCGAATAGTAACCGCACAAACAGATTTCTCTCGCGAATTAGGTATTCGTTGGAGT
GCGCAAAAACTCAATAACAATCCTGTGTGGGGTGGGGATTTCCAACCGAGTTTTGATTTAGGTGTGGATCTGACAACAGC
GACAGCAGGAACGTTTAATTTTGGATTGCTGAAAATTTCAGATTATATGTTGAACCTTGAGCTAACGGCACTACAAGCAG
ATGGTCACGGTGAAGTGTTGTCAGCTCCTAAAGTTTTAACAGGTGATAAGCAGAAAGCCTATATTCTACGTGGAGATCAA
ATTCCTTACCAAACTTGGAGTGCGGATACAGGAACAACAACTAGTTTTGTTGATGCGAATTTGAAGTTAGAAGTCACGCC
AAGTATTACACCTGATGGTCGCGTACAAATGTCGCTAAAAATTGAAAAAGATACTATTGGTAGACTAACCGCAGCGGGTT
ATTTGATTAATACCAATGAACTTGAAACCAATGTTTTGGTGGATGATGGTGAAACAGTCGTACTTGGTGGTATTTTTGAT
GACATTAAGCAAAATCAATATGAGAAAGTTCCATTTTTTGGGGATTTGCCTGTAGTGGGTGCTTTATTTAAAAATAACAC
CAAATCTAGTGCGCAAACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(530-684)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

Secretin and TonB N terminus short domain (STN)

(305-348)

AMIN domain (AMIN)

(55-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.651

100

0.685
  pilQ Acinetobacter baumannii strain A118

65.512

100

0.684
  comQ Acinetobacter baylyi ADP1

63.062

100

0.649
  pilQ Pseudomonas aeruginosa PAK

39.394

100

0.395
  pilQ Legionella pneumophila strain Lp02

37.881

99.566

0.377
  pilQ Legionella pneumophila strain ERS1305867

38.067

98.699

0.376