Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   JW980_RS01550 Genome accession   NZ_CP070866
Coordinates   321010..321666 (+) Length   218 a.a.
NCBI ID   WP_005401354.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316010..326666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS01535 (JW980_01535) - 316420..317226 (+) 807 WP_201701773.1 putative RNA methyltransferase -
  JW980_RS01540 (JW980_01540) ponA 317258..319786 (-) 2529 WP_201701771.1 penicillin-binding protein PBP1a -
  JW980_RS01545 (JW980_01545) pilM 319952..321010 (+) 1059 WP_125273594.1 pilus assembly protein PilM Machinery gene
  JW980_RS01550 (JW980_01550) pilN 321010..321666 (+) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  JW980_RS01555 (JW980_01555) pilO 321663..322385 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  JW980_RS01560 (JW980_01560) pilP 322385..322912 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  JW980_RS01565 (JW980_01565) pilQ 322932..325010 (+) 2079 WP_205667517.1 type IV pilus secretin PilQ Machinery gene
  JW980_RS01570 (JW980_01570) - 325099..325581 (+) 483 WP_207778853.1 shikimate kinase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24226.65 Da        Isoelectric Point: 5.1439

>NTDB_id=541133 JW980_RS01550 WP_005401354.1 321010..321666(+) (pilN) [Acinetobacter johnsonii strain XY27]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPDATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=541133 JW980_RS01550 WP_005401354.1 321010..321666(+) (pilN) [Acinetobacter johnsonii strain XY27]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTAGCTTGGTTCTTTTACAGTCAAAAACTGGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTCCAATTAAAGTCATTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGCCCTGTGGCTGTACGTTTGGTCGATGAAATGGTACG
TGTTACACCAAGTAATATGTACATTACTAAGTTTGTGCGCACAGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGAAATCTCGAAGCATCTGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGCTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACATTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTGATGCGACGACACCTGAAGCAGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.856

95.872

0.67
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665