Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   JW980_RS01560 Genome accession   NZ_CP070866
Coordinates   322385..322912 (+) Length   175 a.a.
NCBI ID   WP_094148569.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317385..327912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS01545 (JW980_01545) pilM 319952..321010 (+) 1059 WP_125273594.1 pilus assembly protein PilM Machinery gene
  JW980_RS01550 (JW980_01550) pilN 321010..321666 (+) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  JW980_RS01555 (JW980_01555) pilO 321663..322385 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  JW980_RS01560 (JW980_01560) pilP 322385..322912 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  JW980_RS01565 (JW980_01565) pilQ 322932..325010 (+) 2079 WP_205667517.1 type IV pilus secretin PilQ Machinery gene
  JW980_RS01570 (JW980_01570) - 325099..325581 (+) 483 WP_207778853.1 shikimate kinase -
  JW980_RS01575 (JW980_01575) aroB 325612..326697 (+) 1086 WP_094148567.1 3-dehydroquinate synthase -
  JW980_RS01580 (JW980_01580) - 326705..327544 (+) 840 WP_094148566.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.56 Da        Isoelectric Point: 7.1331

>NTDB_id=541135 JW980_RS01560 WP_094148569.1 322385..322912(+) (pilP) [Acinetobacter johnsonii strain XY27]
MKYQNLMLSLCVGLFLVGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=541135 JW980_RS01560 WP_094148569.1 322385..322912(+) (pilP) [Acinetobacter johnsonii strain XY27]
ATGAAATATCAAAATCTCATGCTTAGTCTCTGCGTTGGACTATTCCTTGTCGGTTGTGATTCACGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGCAATCAGCCACCATTGCCGATTGAGCCTGCGCCAGATTTTCCACCTGTACCGACTTTTA
ATTATGCCGCACATCAATTAAAGAGTCCGTTTATGCCAAGCTCATTGGCAGCTGAATTGAAAATTATGGCTGGAAAGCGT
GTTTATCCAAACTTATCTCGCCAATTACAACCTTTGGAAAGTTATGCGATTGAATCGCTTAACATGAAAGGTAGTATGCG
CGGGCAAAATGGACAAATTTTGGCGTTGATTCAAACACCTGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCCACACAAATTGATTTGATTGAAATTATTCCGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.771
  comL Acinetobacter baylyi ADP1

71.429

100

0.714