Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JWV26_RS14815 Genome accession   NZ_CP070505
Coordinates   3233059..3234279 (-) Length   406 a.a.
NCBI ID   WP_206417195.1    Uniprot ID   -
Organism   Ectopseudomonas toyotomiensis strain SM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3228059..3239279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWV26_RS14775 (JWV26_14775) - 3228517..3228690 (-) 174 WP_206417190.1 DUF3094 domain-containing protein -
  JWV26_RS14780 (JWV26_14780) - 3228715..3229263 (-) 549 WP_206417191.1 MOSC domain-containing protein -
  JWV26_RS14785 (JWV26_14785) - 3229260..3229889 (-) 630 WP_072423155.1 DUF1780 domain-containing protein -
  JWV26_RS14790 (JWV26_14790) - 3230103..3230792 (+) 690 WP_072423154.1 energy-coupling factor ABC transporter permease -
  JWV26_RS14795 (JWV26_14795) - 3230900..3231115 (+) 216 WP_206417192.1 hypothetical protein -
  JWV26_RS14800 (JWV26_14800) yacG 3231212..3231406 (-) 195 WP_004425006.1 DNA gyrase inhibitor YacG -
  JWV26_RS14805 (JWV26_14805) coaE 3231403..3232011 (-) 609 WP_206417193.1 dephospho-CoA kinase -
  JWV26_RS14810 (JWV26_14810) pilD 3232189..3233055 (-) 867 WP_206417194.1 prepilin peptidase Machinery gene
  JWV26_RS14815 (JWV26_14815) pilC 3233059..3234279 (-) 1221 WP_206417195.1 type II secretion system F family protein Machinery gene
  JWV26_RS14820 (JWV26_14820) pilB 3234283..3235983 (-) 1701 WP_206417196.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JWV26_RS24525 (JWV26_14825) - 3236212..3236397 (+) 186 WP_003242736.1 type IV pilin protein -
  JWV26_RS14830 (JWV26_14830) - 3236409..3236864 (+) 456 WP_206417197.1 hypothetical protein -
  JWV26_RS24530 (JWV26_14835) pilA 3236962..3237141 (+) 180 WP_206417198.1 type IV pilin protein Machinery gene
  JWV26_RS14840 (JWV26_14840) - 3237376..3238017 (+) 642 WP_241201220.1 hypothetical protein -
  JWV26_RS14845 (JWV26_14845) - 3237987..3238859 (+) 873 WP_241201221.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44447.17 Da        Isoelectric Point: 9.7877

>NTDB_id=540330 JWV26_RS14815 WP_206417195.1 3233059..3234279(-) (pilC) [Ectopseudomonas toyotomiensis strain SM2]
MAEKALKTSVFAWEGTDRKGGKIKGEISGQSPALVKAQLRKQGINPLKVRKKAASLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPNMRKLIDEIKQEVAAGNSFATSLRKKPMYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVVVVAVIVTAILLIKVVPQFESVFEGFGAQLPAFTMVVVNLSRWLQEWWFLVLFAIFISFYSFG
QMYKRSEKFRDSLDRALLKAPIVGPILYKAVVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVNRIKNDVSSGS
QLNFSMRNTGIFPTMAVQMTAIGEEAGSLDEMLDKTAGYYEEEVDNAVDNLTTLMEPLIMSVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=540330 JWV26_RS14815 WP_206417195.1 3233059..3234279(-) (pilC) [Ectopseudomonas toyotomiensis strain SM2]
ATGGCGGAAAAAGCACTGAAAACCAGCGTATTCGCCTGGGAAGGTACCGATAGAAAAGGCGGCAAGATCAAGGGAGAGAT
TTCCGGCCAATCTCCCGCACTGGTCAAGGCCCAACTGCGCAAGCAGGGCATCAACCCACTCAAGGTGCGTAAAAAGGCAG
CTTCTCTTTTCAGCGCGGGCAAGAAGATCAAGCCGATGGATATCGCCTTGTTCACCCGCCAGATGGCCACCATGATGAAA
GCTGGCGTGCCACTGCTGCAGTCGTTCGACATTATCGCCGAAGGCTTCGACAACCCGAACATGCGCAAGCTAATCGATGA
GATCAAGCAGGAAGTAGCTGCGGGCAATAGCTTCGCCACCTCGCTACGTAAAAAGCCGATGTATTTCGATGACTTGTACT
GCAACCTGGTCGACTCCGGCGAACAGTCCGGTGCCCTGGAAACATTGCTCGACAGGGTCGCCACCTATAAGGAAAAAACC
GAAGCGCTGAAAGCCAAGATCAAGAAGGCCATGACCTACCCTATTGCGGTAGTCGTGGTGGCAGTGATCGTCACGGCGAT
TCTGTTGATCAAGGTCGTACCGCAGTTCGAGAGCGTATTCGAAGGCTTTGGCGCACAGCTCCCTGCCTTTACGATGGTGG
TGGTCAACCTTTCCAGATGGCTGCAGGAGTGGTGGTTCCTAGTACTGTTCGCGATCTTCATCTCGTTCTACAGCTTCGGC
CAGATGTACAAACGCTCGGAGAAGTTTCGCGACTCACTAGACCGAGCGCTGCTCAAAGCCCCCATCGTTGGCCCCATTCT
GTACAAGGCTGTAGTCGCGCGCTTTGCTCGAACCCTGGCAACCACGTTTGCTGCTGGCGTACCACTGGTTGACGCACTGG
ACTCCGTGGCGGGCGCGACCGGCAACGTGGTGTTTCGCAATGCGGTCAACCGTATCAAGAATGATGTCTCATCAGGCTCG
CAGCTCAACTTCTCCATGCGCAACACCGGGATTTTCCCAACCATGGCCGTACAGATGACCGCCATCGGTGAAGAGGCCGG
TTCTCTGGATGAAATGCTGGATAAAACCGCCGGTTACTATGAAGAAGAAGTGGACAACGCGGTAGATAACCTCACCACGC
TGATGGAGCCACTGATCATGTCTGTGCTCGGTGTGCTGGTCGGCGGCCTGATCATCGCCATGTATCTCCCCATCTTCCAA
CTCGGTTCGGTGGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.494

99.754

0.803
  pilC Acinetobacter baylyi ADP1

61.084

100

0.611
  pilC Acinetobacter baumannii D1279779

60.494

99.754

0.603
  pilC Legionella pneumophila strain ERS1305867

54.798

97.537

0.534
  pilG Neisseria gonorrhoeae MS11

44.527

99.015

0.441
  pilG Neisseria meningitidis 44/76-A

44.527

99.015

0.441
  pilC Vibrio cholerae strain A1552

42.365

100

0.424
  pilC Vibrio campbellii strain DS40M4

42.211

98.03

0.414