Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LL046_RS12090 Genome accession   NZ_CP086088
Coordinates   2350868..2351461 (-) Length   197 a.a.
NCBI ID   WP_017865241.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2345868..2356461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS12060 (LL046_12010) - 2346076..2346240 (-) 165 WP_003131988.1 hypothetical protein -
  LL046_RS12065 (LL046_12015) - 2346345..2346962 (-) 618 WP_017865237.1 AAA family ATPase -
  LL046_RS12070 (LL046_12020) - 2346959..2348077 (-) 1119 WP_235585843.1 ABC transporter permease -
  LL046_RS12075 (LL046_12025) - 2348209..2348493 (-) 285 WP_226898144.1 hypothetical protein -
  LL046_RS12080 (LL046_12030) - 2348719..2349603 (-) 885 WP_017865240.1 Rgg/GadR/MutR family transcriptional regulator -
  LL046_RS12085 (LL046_12035) ruvB 2349740..2350741 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LL046_RS12090 (LL046_12040) ruvA 2350868..2351461 (-) 594 WP_017865241.1 Holliday junction branch migration protein RuvA Machinery gene
  LL046_RS12095 (LL046_12045) hexB 2351574..2353544 (-) 1971 WP_026138979.1 DNA mismatch repair endonuclease MutL Machinery gene
  LL046_RS12100 (LL046_12050) - 2353673..2354368 (-) 696 WP_017865243.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21180.75 Da        Isoelectric Point: 5.8218

>NTDB_id=540329 LL046_RS12090 WP_017865241.1 2350868..2351461(-) (ruvA) [Lactococcus lactis subsp. lactis strain EIP13A]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLEAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=540329 LL046_RS12090 WP_017865241.1 2350868..2351461(-) (ruvA) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACGGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGAGGCTGGACCTGCTGGAAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTACAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462