Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | JWV26_RS14810 | Genome accession | NZ_CP070505 |
| Coordinates | 3232189..3233055 (-) | Length | 288 a.a. |
| NCBI ID | WP_206417194.1 | Uniprot ID | - |
| Organism | Ectopseudomonas toyotomiensis strain SM2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3227189..3238055
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JWV26_RS14775 (JWV26_14775) | - | 3228517..3228690 (-) | 174 | WP_206417190.1 | DUF3094 domain-containing protein | - |
| JWV26_RS14780 (JWV26_14780) | - | 3228715..3229263 (-) | 549 | WP_206417191.1 | MOSC domain-containing protein | - |
| JWV26_RS14785 (JWV26_14785) | - | 3229260..3229889 (-) | 630 | WP_072423155.1 | DUF1780 domain-containing protein | - |
| JWV26_RS14790 (JWV26_14790) | - | 3230103..3230792 (+) | 690 | WP_072423154.1 | energy-coupling factor ABC transporter permease | - |
| JWV26_RS14795 (JWV26_14795) | - | 3230900..3231115 (+) | 216 | WP_206417192.1 | hypothetical protein | - |
| JWV26_RS14800 (JWV26_14800) | yacG | 3231212..3231406 (-) | 195 | WP_004425006.1 | DNA gyrase inhibitor YacG | - |
| JWV26_RS14805 (JWV26_14805) | coaE | 3231403..3232011 (-) | 609 | WP_206417193.1 | dephospho-CoA kinase | - |
| JWV26_RS14810 (JWV26_14810) | pilD | 3232189..3233055 (-) | 867 | WP_206417194.1 | prepilin peptidase | Machinery gene |
| JWV26_RS14815 (JWV26_14815) | pilC | 3233059..3234279 (-) | 1221 | WP_206417195.1 | type II secretion system F family protein | Machinery gene |
| JWV26_RS14820 (JWV26_14820) | pilB | 3234283..3235983 (-) | 1701 | WP_206417196.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JWV26_RS24525 (JWV26_14825) | - | 3236212..3236397 (+) | 186 | WP_003242736.1 | type IV pilin protein | - |
| JWV26_RS14830 (JWV26_14830) | - | 3236409..3236864 (+) | 456 | WP_206417197.1 | hypothetical protein | - |
| JWV26_RS24530 (JWV26_14835) | pilA | 3236962..3237141 (+) | 180 | WP_206417198.1 | type IV pilin protein | Machinery gene |
| JWV26_RS14840 (JWV26_14840) | - | 3237376..3238017 (+) | 642 | WP_241201220.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31645.57 Da Isoelectric Point: 5.1953
>NTDB_id=540329 JWV26_RS14810 WP_206417194.1 3232189..3233055(-) (pilD) [Ectopseudomonas toyotomiensis strain SM2]
MAFDFMADNLSAFVFACAIFGLLIGSFLNVVVYRLPLMLLRDWQGQAREVLELPPAAPAETFNLLLPNSSCPDCGHEIKP
WENIPVISYLFLRGKCSNCKTPISKRYPIVELACGLLSAYVAWHFGFTWQAGAMLVLAWGLLAMSLIDADHQILPDVLVL
PLLWLGLIVNYFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA
VLGVILLRMRGSDSGTPIPFGPYLAIAGWIALLWGDVITGSYLKFAGF
MAFDFMADNLSAFVFACAIFGLLIGSFLNVVVYRLPLMLLRDWQGQAREVLELPPAAPAETFNLLLPNSSCPDCGHEIKP
WENIPVISYLFLRGKCSNCKTPISKRYPIVELACGLLSAYVAWHFGFTWQAGAMLVLAWGLLAMSLIDADHQILPDVLVL
PLLWLGLIVNYFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA
VLGVILLRMRGSDSGTPIPFGPYLAIAGWIALLWGDVITGSYLKFAGF
Nucleotide
Download Length: 867 bp
>NTDB_id=540329 JWV26_RS14810 WP_206417194.1 3232189..3233055(-) (pilD) [Ectopseudomonas toyotomiensis strain SM2]
ATGGCGTTCGACTTTATGGCCGACAATCTGTCGGCCTTTGTTTTTGCCTGTGCGATTTTCGGTCTACTGATCGGCAGCTT
CCTCAACGTCGTGGTCTACCGTCTGCCGCTGATGCTGCTGCGCGATTGGCAAGGCCAGGCTCGGGAGGTACTGGAGTTAC
CGCCCGCCGCACCAGCAGAAACCTTCAACCTGCTTCTGCCCAACTCCTCATGCCCTGATTGCGGCCATGAGATAAAACCC
TGGGAGAACATCCCGGTCATCAGCTACCTGTTTCTGCGCGGCAAGTGTTCGAACTGCAAGACACCGATCAGCAAGCGTTA
CCCCATCGTTGAACTGGCCTGCGGGCTGCTTTCCGCTTACGTCGCCTGGCATTTCGGTTTCACCTGGCAGGCCGGGGCGA
TGCTGGTGCTGGCCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCTGATCACCAGATTCTGCCGGATGTACTGGTGCTG
CCGTTGCTGTGGCTGGGCTTGATCGTCAATTACTTCGGGTTGTTCACCAGCTTGGAAGATGCTCTGTGGGGGGCGATTGC
CGGTTACCTGAGCCTGTGGTCAGTGTATTGGCTGTTTAAGCTGATCACCGGCAAGGAAGGCATGGGTTACGGTGACTTCA
AGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGTTGACCATTCTGCTGTCGTCGCTGGTCGGGGCG
GTGCTAGGTGTGATTCTGCTGCGCATGCGTGGCAGTGATTCCGGCACGCCGATTCCCTTCGGCCCTTATCTGGCGATTGC
CGGGTGGATCGCCCTGCTGTGGGGTGATGTGATTACCGGCAGCTATCTGAAGTTCGCTGGGTTTTGA
ATGGCGTTCGACTTTATGGCCGACAATCTGTCGGCCTTTGTTTTTGCCTGTGCGATTTTCGGTCTACTGATCGGCAGCTT
CCTCAACGTCGTGGTCTACCGTCTGCCGCTGATGCTGCTGCGCGATTGGCAAGGCCAGGCTCGGGAGGTACTGGAGTTAC
CGCCCGCCGCACCAGCAGAAACCTTCAACCTGCTTCTGCCCAACTCCTCATGCCCTGATTGCGGCCATGAGATAAAACCC
TGGGAGAACATCCCGGTCATCAGCTACCTGTTTCTGCGCGGCAAGTGTTCGAACTGCAAGACACCGATCAGCAAGCGTTA
CCCCATCGTTGAACTGGCCTGCGGGCTGCTTTCCGCTTACGTCGCCTGGCATTTCGGTTTCACCTGGCAGGCCGGGGCGA
TGCTGGTGCTGGCCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCTGATCACCAGATTCTGCCGGATGTACTGGTGCTG
CCGTTGCTGTGGCTGGGCTTGATCGTCAATTACTTCGGGTTGTTCACCAGCTTGGAAGATGCTCTGTGGGGGGCGATTGC
CGGTTACCTGAGCCTGTGGTCAGTGTATTGGCTGTTTAAGCTGATCACCGGCAAGGAAGGCATGGGTTACGGTGACTTCA
AGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGTTGACCATTCTGCTGTCGTCGCTGGTCGGGGCG
GTGCTAGGTGTGATTCTGCTGCGCATGCGTGGCAGTGATTCCGGCACGCCGATTCCCTTCGGCCCTTATCTGGCGATTGC
CGGGTGGATCGCCCTGCTGTGGGGTGATGTGATTACCGGCAGCTATCTGAAGTTCGCTGGGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter baumannii D1279779 |
53.214 |
97.222 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
52.857 |
97.222 |
0.514 |
| pilD | Vibrio cholerae strain A1552 |
52.92 |
95.139 |
0.503 |
| pilD | Vibrio campbellii strain DS40M4 |
52.555 |
95.139 |
0.5 |
| pilD | Neisseria gonorrhoeae MS11 |
48.855 |
90.972 |
0.444 |