Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JTM82_RS11485 Genome accession   NZ_CP070500
Coordinates   2722384..2723412 (-) Length   342 a.a.
NCBI ID   WP_011551557.1    Uniprot ID   Q1DCC5
Organism   Myxococcus xanthus DZ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2717384..2728412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTM82_RS11465 (JTM82_11460) pssA 2718048..2718914 (+) 867 WP_020477746.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  JTM82_RS11470 (JTM82_11465) - 2719026..2720291 (+) 1266 WP_011551554.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  JTM82_RS11475 (JTM82_11470) - 2720288..2721820 (+) 1533 WP_011551555.1 hypothetical protein -
  JTM82_RS11480 (JTM82_11475) - 2721878..2722387 (+) 510 WP_171452300.1 DUF1285 domain-containing protein -
  JTM82_RS11485 (JTM82_11480) recA 2722384..2723412 (-) 1029 WP_011551557.1 recombinase RecA Machinery gene
  JTM82_RS11490 (JTM82_11485) - 2723707..2725092 (+) 1386 WP_011551558.1 NAD(P)/FAD-dependent oxidoreductase -
  JTM82_RS11495 (JTM82_11490) - 2725108..2726751 (-) 1644 WP_011551559.1 YifB family Mg chelatase-like AAA ATPase -
  JTM82_RS11500 (JTM82_11495) - 2726949..2727623 (+) 675 WP_011551560.1 hypothetical protein -
  JTM82_RS11505 (JTM82_11500) - 2727524..2728147 (-) 624 WP_011551561.1 DUF2378 family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36055.36 Da        Isoelectric Point: 7.4739

>NTDB_id=540229 JTM82_RS11485 WP_011551557.1 2722384..2723412(-) (recA) [Myxococcus xanthus DZ2]
MSKLAEKLKAVAAAVASIEKQFGRGSVMTLGGEAREQKVAVIPSGSVGVDRALGVGGYPRGRVVEVFGNESSGKTTLTLH
AIAQVQAAGGVAAFIDAEHALDVSYARKLGVRVEELLVSQPDTGEQALEITEHLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNIKDGDAVV
GSKARVKVVKNKVAPPFQEAEFDLMYGSGIHRVGEVLDLGVATGLIEKSGSYFSLRGERIGQGRERAAEWLREHPDVLEA
LGKEITGTSALPSSPAPVEVAA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=540229 JTM82_RS11485 WP_011551557.1 2722384..2723412(-) (recA) [Myxococcus xanthus DZ2]
ATGAGCAAGCTGGCGGAGAAGCTGAAGGCAGTGGCGGCGGCGGTAGCGAGCATCGAGAAGCAGTTCGGACGAGGCTCGGT
GATGACGTTGGGCGGGGAAGCACGCGAACAGAAGGTCGCCGTCATCCCCTCCGGCTCGGTGGGGGTGGACCGCGCGCTGG
GCGTGGGCGGCTATCCCCGGGGCCGTGTGGTGGAGGTCTTCGGGAACGAGTCCTCGGGCAAGACGACGCTCACCCTGCAT
GCGATTGCACAGGTGCAGGCGGCGGGTGGCGTAGCGGCCTTCATCGACGCGGAGCACGCGCTGGATGTGTCCTACGCGCG
CAAGCTGGGCGTCCGTGTGGAGGAGTTGCTCGTGTCGCAACCCGACACCGGCGAACAGGCGCTGGAAATCACGGAGCACC
TGGTGCGCTCCGGCGCGGTGGACCTCATCGTCGTCGACTCGGTGGCGGCCCTGGTGCCACGGGCCGAAATCGAGGGCGAG
ATGGGGGACGCGCACATGGGCGTCCAGGCGAGGCTGATGAGTCAGGCGCTGCGCAAGCTGACGGGCGCGGTGAGCCGCTC
GGGCACGTGCATCATCTTCATCAACCAGATTCGGATGAAGATTGGCGTGATGTTCGGCAATCCGGAAACCACCACGGGTG
GCAATGCGCTGAAGTTCTACGCATCCGTGCGGATGGAGATTCGCCGCACGGGCAACATCAAGGACGGTGATGCCGTCGTG
GGCTCGAAGGCGCGCGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCCTTCCAGGAAGCGGAGTTCGACCTCATGTACGG
CAGCGGCATCCACCGCGTGGGGGAAGTGCTCGACCTCGGCGTGGCCACGGGCCTCATCGAGAAGTCGGGGAGCTACTTCA
GCCTGCGCGGAGAGCGCATCGGCCAGGGCCGGGAGCGCGCCGCCGAGTGGCTGCGCGAACATCCCGACGTGCTGGAAGCG
CTGGGCAAGGAGATTACGGGGACTTCCGCCCTGCCCTCCTCGCCCGCGCCGGTGGAGGTCGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1DCC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.01

91.52

0.632
  recA Pseudomonas stutzeri DSM 10701

65.312

93.567

0.611
  recA Glaesserella parasuis strain SC1401

62.462

97.368

0.608
  recA Acinetobacter baylyi ADP1

61.012

98.246

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.263

93.275

0.599
  recA Vibrio cholerae strain A1552

64.263

93.275

0.599
  recA Neisseria gonorrhoeae strain FA1090

63.75

93.567

0.596
  recA Neisseria gonorrhoeae MS11

63.75

93.567

0.596
  recA Neisseria gonorrhoeae MS11

63.75

93.567

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

94.152

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

59.403

97.953

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.923

95.029

0.579
  recA Acinetobacter baumannii D1279779

61.755

93.275

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.752

94.444

0.564
  recA Helicobacter pylori 26695

59.006

94.152

0.556
  recA Helicobacter pylori strain NCTC11637

59.006

94.152

0.556
  recA Lactococcus lactis subsp. cremoris KW2

57.1

96.784

0.553
  recA Streptococcus pneumoniae Rx1

58.154

95.029

0.553
  recA Streptococcus pneumoniae D39

58.154

95.029

0.553
  recA Streptococcus pneumoniae R6

58.154

95.029

0.553
  recA Streptococcus pneumoniae TIGR4

58.154

95.029

0.553
  recA Streptococcus mitis SK321

57.231

95.029

0.544
  recA Streptococcus pyogenes NZ131

57.407

94.737

0.544
  recA Streptococcus mitis NCTC 12261

56.923

95.029

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.786

91.52

0.538
  recA Streptococcus mutans UA159

56.481

94.737

0.535