Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JTM82_RS09610 Genome accession   NZ_CP070500
Coordinates   2270893..2271390 (+) Length   165 a.a.
NCBI ID   WP_011551191.1    Uniprot ID   Q1DDE2
Organism   Myxococcus xanthus DZ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2265893..2276390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTM82_RS09590 (JTM82_09585) - 2266452..2266913 (+) 462 WP_011551186.1 PTS sugar transporter subunit IIA -
  JTM82_RS09595 (JTM82_09590) - 2266947..2267792 (+) 846 WP_026113883.1 hypothetical protein -
  JTM82_RS09600 (JTM82_09595) dtd 2267789..2268250 (-) 462 WP_011551188.1 D-aminoacyl-tRNA deacylase -
  JTM82_RS09605 (JTM82_09600) dacB 2268436..2270682 (+) 2247 WP_020478175.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine endopeptidase -
  JTM82_RS09610 (JTM82_09605) ssb 2270893..2271390 (+) 498 WP_011551191.1 single-stranded DNA-binding protein Machinery gene
  JTM82_RS09615 (JTM82_09610) - 2271513..2272193 (-) 681 WP_011551192.1 succinate dehydrogenase -
  JTM82_RS09620 (JTM82_09615) - 2272456..2273340 (+) 885 WP_011551193.1 Hsp33 family molecular chaperone HslO -
  JTM82_RS09625 (JTM82_09620) - 2273363..2274406 (+) 1044 WP_225888549.1 Leu/Phe/Val dehydrogenase -
  JTM82_RS09630 (JTM82_09625) - 2274469..2275212 (+) 744 WP_011551195.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17629.34 Da        Isoelectric Point: 5.7963

>NTDB_id=540226 JTM82_RS09610 WP_011551191.1 2270893..2271390(+) (ssb) [Myxococcus xanthus DZ2]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGRRQFSQQRGGDNNDYGQPPPDDMGGGHGGGNGD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=540226 JTM82_RS09610 WP_011551191.1 2270893..2271390(+) (ssb) [Myxococcus xanthus DZ2]
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGTGGCCGTGACGCCGGAGACGGCATGGGCGGCGGGGGCGGGGGCGGTGGACGCCGGCAGTTCTCCCAGC
AGCGTGGGGGAGACAACAACGACTACGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGCAACGGCGAC
GACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1DDE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.253

100

0.521
  ssb Glaesserella parasuis strain SC1401

41.989

100

0.461
  ssb Neisseria meningitidis MC58

42.197

100

0.442
  ssb Neisseria gonorrhoeae MS11

42.197

100

0.442