Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JWZ97_RS06520 Genome accession   NZ_CP070491
Coordinates   1573836..1575050 (+) Length   404 a.a.
NCBI ID   WP_205433988.1    Uniprot ID   A0A974VW16
Organism   Methylococcus sp. EFPC2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568836..1580050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ97_RS06510 (JWZ97_06510) pgaB 1569957..1571846 (-) 1890 WP_205433986.1 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB -
  JWZ97_RS06515 (JWZ97_06515) pilB 1572117..1573832 (+) 1716 WP_205433987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JWZ97_RS06520 (JWZ97_06520) pilC 1573836..1575050 (+) 1215 WP_205433988.1 type II secretion system F family protein Machinery gene
  JWZ97_RS06525 (JWZ97_06525) pilD 1575067..1575945 (+) 879 WP_205433989.1 A24 family peptidase Machinery gene
  JWZ97_RS06530 (JWZ97_06530) coaE 1575949..1576548 (+) 600 WP_205433990.1 dephospho-CoA kinase -
  JWZ97_RS06535 (JWZ97_06535) zapD 1576571..1577392 (+) 822 WP_240342515.1 cell division protein ZapD -
  JWZ97_RS06540 (JWZ97_06540) - 1577695..1578969 (+) 1275 WP_205433991.1 oligosaccharide flippase family protein -
  JWZ97_RS06545 (JWZ97_06545) - 1578971..1579636 (+) 666 WP_205433992.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44167.25 Da        Isoelectric Point: 9.6893

>NTDB_id=540176 JWZ97_RS06520 WP_205433988.1 1573836..1575050(+) (pilC) [Methylococcus sp. EFPC2]
MAKEELTLFVWEGTDRNGGRIKGELSARTETLAKADLRRQGIKVVKIKKKPKPLFSARKKKITPKDIAVFSRQLATMMSA
GVPLVQAFDIVGRGHENPSMQELIMAIKADVEGGAPLAESLGKHPLYFDELFCNLVHAGEQAGVLETLLHKIAEYKEKTE
SLKGKIKKALFYPTAVMVVAVIVTAILLIFVVPQFEDLFKGFGAELPAFTQMVVNMSRFTQEYWYIMLGAAVAIGFAVMN
LKRRSVGFNHFLDRAILKIPVIGEIMRKSAIARFARTLATMSTAGVPLVEALKSVAGATGNVVYGQAVLLMRDEVATGHQ
LQLAMRQSNLFPNMVIQMVSIGEESGSIDSMLAKVADFFEEEVDNAVDALSSLLEPMIMAFLGVVVGGLVIAMYLPIFKL
GSVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=540176 JWZ97_RS06520 WP_205433988.1 1573836..1575050(+) (pilC) [Methylococcus sp. EFPC2]
ATGGCCAAAGAAGAACTCACGCTGTTCGTCTGGGAGGGAACCGACCGGAATGGCGGCCGCATCAAAGGCGAGTTGAGCGC
GCGCACCGAAACCCTGGCCAAGGCCGACCTGCGCCGTCAGGGTATCAAGGTTGTCAAGATCAAGAAAAAACCCAAACCGC
TGTTCAGCGCCCGCAAGAAAAAGATCACGCCCAAGGACATCGCCGTGTTCAGCCGCCAGTTGGCCACCATGATGTCGGCC
GGCGTGCCCCTCGTGCAGGCATTCGACATCGTGGGCCGCGGACACGAGAATCCCAGCATGCAGGAGCTGATCATGGCGAT
CAAGGCGGATGTCGAGGGCGGAGCACCACTGGCCGAGTCGCTGGGCAAGCACCCGCTTTATTTCGACGAGTTGTTCTGCA
ACCTAGTACACGCGGGCGAGCAGGCCGGCGTGCTGGAAACCCTGTTGCACAAGATCGCCGAATACAAGGAAAAAACCGAA
TCCCTCAAGGGCAAGATCAAAAAGGCCTTGTTCTATCCAACCGCCGTCATGGTCGTGGCGGTCATCGTCACCGCCATCCT
GCTGATTTTCGTCGTCCCACAATTCGAAGACTTGTTCAAGGGGTTTGGCGCCGAACTGCCCGCCTTCACCCAGATGGTTG
TGAACATGTCGCGCTTCACGCAGGAATACTGGTACATCATGCTCGGCGCCGCGGTCGCCATCGGCTTCGCCGTCATGAAC
TTAAAAAGACGCTCCGTGGGCTTCAATCACTTCCTCGACCGGGCCATCCTGAAAATACCGGTCATCGGCGAAATCATGCG
CAAGTCGGCCATCGCCCGTTTCGCCCGCACCCTCGCCACCATGTCGACCGCCGGCGTCCCCTTGGTGGAAGCCTTGAAAT
CCGTCGCAGGCGCCACCGGGAACGTGGTCTACGGCCAGGCCGTGTTGCTGATGCGCGACGAAGTGGCGACCGGCCACCAG
TTGCAACTGGCCATGCGGCAGAGCAATCTGTTCCCCAACATGGTGATCCAGATGGTTTCCATCGGCGAGGAATCCGGCTC
CATCGACAGCATGTTGGCCAAGGTGGCGGACTTCTTCGAGGAAGAAGTCGACAACGCCGTCGACGCCTTGAGCAGCCTGC
TGGAACCCATGATCATGGCCTTTCTTGGCGTCGTGGTGGGCGGCCTGGTCATTGCGATGTACCTCCCGATATTCAAGTTG
GGTTCGGTAGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

61.905

98.762

0.611
  pilC Acinetobacter baumannii D1279779

59.446

98.267

0.584
  pilC Pseudomonas stutzeri DSM 10701

58.794

98.515

0.579
  pilC Acinetobacter baylyi ADP1

57.568

99.752

0.574
  pilG Neisseria meningitidis 44/76-A

48.25

99.01

0.478
  pilG Neisseria gonorrhoeae MS11

48

99.01

0.475
  pilC Vibrio cholerae strain A1552

42.965

98.515

0.423
  pilC Vibrio campbellii strain DS40M4

42.394

99.257

0.421
  pilC Thermus thermophilus HB27

39.9

99.257

0.396