Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JWZ97_RS06525 Genome accession   NZ_CP070491
Coordinates   1575067..1575945 (+) Length   292 a.a.
NCBI ID   WP_205433989.1    Uniprot ID   A0A974VUL9
Organism   Methylococcus sp. EFPC2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570067..1580945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ97_RS06515 (JWZ97_06515) pilB 1572117..1573832 (+) 1716 WP_205433987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JWZ97_RS06520 (JWZ97_06520) pilC 1573836..1575050 (+) 1215 WP_205433988.1 type II secretion system F family protein Machinery gene
  JWZ97_RS06525 (JWZ97_06525) pilD 1575067..1575945 (+) 879 WP_205433989.1 A24 family peptidase Machinery gene
  JWZ97_RS06530 (JWZ97_06530) coaE 1575949..1576548 (+) 600 WP_205433990.1 dephospho-CoA kinase -
  JWZ97_RS06535 (JWZ97_06535) zapD 1576571..1577392 (+) 822 WP_240342515.1 cell division protein ZapD -
  JWZ97_RS06540 (JWZ97_06540) - 1577695..1578969 (+) 1275 WP_205433991.1 oligosaccharide flippase family protein -
  JWZ97_RS06545 (JWZ97_06545) - 1578971..1579636 (+) 666 WP_205433992.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  JWZ97_RS06550 (JWZ97_06550) - 1579702..1580646 (+) 945 WP_205433993.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31842.60 Da        Isoelectric Point: 6.8879

>NTDB_id=540177 JWZ97_RS06525 WP_205433989.1 1575067..1575945(+) (pilD) [Methylococcus sp. EFPC2]
MYTLQILLDSPALSTTLAGLLGLIVGSFLNVVVYRLPLMMERDWKRQCHEYLGQEVPAPHDPKLNLVTPRSRCPHCGHAI
GAHENIPVLSYLLLKGRCSACNAAISVRYPVIEVFTALVSAVVVWRLGPTWQAALALPFSWGLISLAVIDIDHQLLPDAI
TQPLLWCGLLLSLFGIYTDSASSIIGAVAGYLGLWLVYHAFKLTTGKEGMGYGDFKLLAVFGAWLGWQMLLPVVLLSSLV
GAIIGIGLIWLRGHDRNIPIPFGPYLAAAGWIALLWGEDLIEAYQNFAGLTS

Nucleotide


Download         Length: 879 bp        

>NTDB_id=540177 JWZ97_RS06525 WP_205433989.1 1575067..1575945(+) (pilD) [Methylococcus sp. EFPC2]
ATGTACACGCTGCAAATATTGCTCGACAGTCCCGCTCTGTCCACGACCCTGGCCGGCCTGCTGGGACTGATAGTGGGGAG
TTTTTTGAATGTCGTCGTTTACCGCTTGCCCCTCATGATGGAGCGGGACTGGAAACGCCAATGCCACGAATACTTGGGGC
AGGAAGTCCCAGCCCCGCATGACCCCAAGCTTAATCTCGTCACACCGAGGTCCCGCTGCCCCCATTGCGGACATGCGATC
GGTGCGCACGAGAACATCCCCGTCCTCAGTTATCTCTTGCTCAAAGGCCGGTGTTCTGCCTGCAATGCCGCCATTTCGGT
CCGCTATCCCGTGATCGAGGTGTTCACCGCACTGGTTTCGGCCGTGGTGGTTTGGCGCTTGGGTCCCACCTGGCAGGCCG
CGTTGGCCCTCCCTTTCAGTTGGGGCCTGATCAGTTTGGCGGTGATCGATATCGATCACCAGTTGTTGCCGGACGCAATC
ACTCAACCGCTGCTTTGGTGCGGACTTCTGCTCAGCCTGTTCGGTATTTACACCGATAGCGCATCAAGCATCATCGGCGC
CGTCGCGGGTTATCTCGGCCTTTGGCTGGTCTACCACGCATTCAAGCTGACGACCGGCAAGGAGGGCATGGGCTACGGAG
ACTTCAAGCTCCTGGCCGTGTTCGGCGCCTGGCTGGGTTGGCAAATGCTGTTGCCTGTCGTACTGCTGTCCTCGCTGGTC
GGCGCAATCATCGGAATAGGATTGATCTGGCTGCGCGGCCACGACCGCAACATCCCCATCCCGTTCGGCCCTTATCTGGC
GGCAGCCGGATGGATCGCACTGCTCTGGGGCGAAGATCTGATCGAGGCCTATCAGAACTTCGCCGGCTTGACGTCCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(140-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.521

97.26

0.521
  pilD Acinetobacter baumannii D1279779

52.434

91.438

0.479
  pilD Acinetobacter nosocomialis M2

52.434

91.438

0.479
  pilD Vibrio campbellii strain DS40M4

48.936

96.575

0.473
  pilD Neisseria gonorrhoeae MS11

46.094

87.671

0.404