Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LL045_RS04280 Genome accession   NZ_CP086083
Coordinates   873074..874741 (+) Length   555 a.a.
NCBI ID   WP_301675838.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 868074..879741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS04255 (LL045_04240) - 869128..869367 (+) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -
  LL045_RS04260 (LL045_04245) - 869516..870673 (+) 1158 WP_394530462.1 glycerate kinase -
  LL045_RS04265 (LL045_04250) - 870754..871611 (+) 858 WP_269889475.1 polyprenyl synthetase family protein -
  LL045_RS04270 (LL045_04255) - 871676..872482 (+) 807 WP_038601477.1 TlyA family RNA methyltransferase -
  LL045_RS04275 (LL045_04260) - 872479..872925 (+) 447 WP_038601476.1 arginine repressor -
  LL045_RS04280 (LL045_04265) recN 873074..874741 (+) 1668 WP_301675838.1 DNA repair protein RecN Machinery gene
  LL045_RS04285 (LL045_04270) - 875466..876032 (+) 567 WP_038601472.1 TMEM175 family protein -
  LL045_RS04290 (LL045_04275) - 876130..876651 (+) 522 WP_058205392.1 DUF805 domain-containing protein -
  LL045_RS04295 (LL045_04280) - 876675..877613 (+) 939 WP_394530463.1 DUF805 domain-containing protein -
  LL045_RS04300 (LL045_04285) rsmH 877833..878786 (+) 954 WP_080739867.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  LL045_RS04305 (LL045_04290) - 878944..879324 (+) 381 WP_003131357.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62775.01 Da        Isoelectric Point: 4.6498

>NTDB_id=540177 LL045_RS04280 WP_301675838.1 873074..874741(+) (recN) [Lactococcus lactis subsp. lactis strain EIP20A]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGANKAEIEGLFFFDKTPELKAVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDAIKD
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLVNRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSEKDSENLENSVKVAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIASKIY
KIARHGQVLAISHLPQVVAVADRQFYIEKASTDDITTSTVRKLNFDERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=540177 LL045_RS04280 WP_301675838.1 873074..874741(+) (recN) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGTGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGGGCGTGCTTCGAGTGATT
TTGTGCGGCATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGGCGGTACTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAAATTTTTGCCAATGGTCGCTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGATGAAGCCTTTGATGCGATAAAAGAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATCCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAG
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACCACAATGACAGAACTGGATAAAATTAGTAACTTTGATAATGACTA
TCAAGAACTTGCTGACAAGACCGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCGGAACTTTTACAAATTGAAGACCGGATTATGACCTTGACTACTTTGAAGAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAACTGACGGGTTCAGAAAAGGACTC
AGAAAATCTAGAAAATTCAGTTAAAGTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTTAATGAAGCGCGCCATA
AAATTGCAAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAGTTTTCGGCAAATGGAAATGAGCATGTTGAATTCTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCACTGGCAAAAACGGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCTATAAAATCAAGCTTTTCAAGACGCGAAA
ATAAAACAGCCATTGTTTTTGACGAGGTTGACACTGGTGTTTCTGGCCGTGTTGCTCAAGCGATTGCTAGTAAAATATAT
AAAATTGCGAGACATGGGCAAGTTCTTGCAATTTCTCACCTTCCACAAGTTGTGGCCGTTGCCGACAGACAATTTTATAT
TGAAAAAGCTTCAACCGATGATATTACTACTTCCACAGTTAGAAAATTAAACTTTGACGAACGAGTTAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCTTTGGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.182

100

0.445