Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GGS_RS00740 Genome accession   NC_018712
Coordinates   126519..126914 (+) Length   131 a.a.
NCBI ID   WP_003060482.1    Uniprot ID   A0A9X8T1Q0
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121519..131914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS00710 (GGS_0136) proC 121894..122670 (-) 777 WP_003058540.1 pyrroline-5-carboxylate reductase -
  GGS_RS00715 pepA 122717..123785 (-) 1069 Protein_108 glutamyl aminopeptidase -
  GGS_RS00720 (GGS_0139) - 124343..124627 (+) 285 WP_173363194.1 DUF4651 domain-containing protein -
  GGS_RS00725 (GGS_0140) - 124624..124941 (+) 318 WP_003055817.1 thioredoxin family protein -
  GGS_RS00730 (GGS_0141) ytpR 124959..125585 (+) 627 WP_003062450.1 YtpR family tRNA-binding protein -
  GGS_RS00735 (GGS_0142) - 125725..126440 (-) 716 Protein_112 class I SAM-dependent methyltransferase -
  GGS_RS00740 (GGS_0143) ssbA 126519..126914 (+) 396 WP_003060482.1 single-stranded DNA-binding protein Machinery gene
  GGS_RS00745 (GGS_0144) - 127424..128386 (+) 963 WP_042357809.1 ABC transporter substrate-binding protein -
  GGS_RS00750 (GGS_0145) - 128416..129375 (+) 960 WP_015016551.1 ABC transporter substrate-binding protein -
  GGS_RS00755 (GGS_0146) - 129416..130300 (+) 885 WP_015016552.1 ABC transporter permease -
  GGS_RS00760 (GGS_0147) - 130395..131624 (-) 1230 WP_042357810.1 IS110 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14860.08 Da        Isoelectric Point: 7.1671

>NTDB_id=53941 GGS_RS00740 WP_003060482.1 126519..126914(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MYNKVIMIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVANDLVDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=53941 GGS_RS00740 WP_003060482.1 126519..126914(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGTATAATAAAGTGATAATGATTGGTCGGTTAGTGGCTAAACCAGAATTGGTAAAAACCGCTACAGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCAGGAGAGCGAGAAGCAGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACCTTGGTTTCTTACGCTAGTAAAGGTAGTTTGATGTCTATTGACGGTGAACTTAGAACCCGC
AAATATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTGCTATGCCAGTCTTTTCAGTTATTGGAAAGTCGTGCTCA
GCGTGCGATGCGAGAAAATAATGTCGCCAATGACTTGGTAGATTTGGTTCTAGAAGAGGAGGAGTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

89.313

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment