Detailed information NTG0053894

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: C380_RS07735
• Genome accession: NC_018708
• Coordinates: 1698745..1699878 (-)
• Length: 377 a.a.
• NCBI ID: WP_015013302.1
• Uniprot ID: A0A8I1SAM1
• Organism: Acidovorax sp. KKS102
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1693745..1704878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C380_RS07720 (C380_07790)	-	1693960..1695342 (+)	1383	WP_015013299.1	serine hydrolase	-
C380_RS07725 (C380_07795)	-	1695394..1696227 (-)	834	WP_015013300.1	alpha/beta hydrolase	-
C380_RS07730 (C380_07800)	-	1696331..1698730 (-)	2400	WP_015013301.1	GspE/PulE family protein	-
C380_RS07735 (C380_07805)	pilU	1698745..1699878 (-)	1134	WP_015013302.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
C380_RS07740 (C380_07810)	gdhA	1700011..1701354 (-)	1344	WP_015013303.1	NADP-specific glutamate dehydrogenase	-
C380_RS07745 (C380_07815)	-	1701630..1702793 (+)	1164	WP_015013304.1	glycerophosphodiester phosphodiesterase	-
C380_RS07750 (C380_07820)	-	1702887..1703570 (-)	684	WP_015013305.1	hypothetical protein	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41362.60 Da
• Isoelectric Point: 6.1319

>NTDB_id=53894 C380_RS07735 WP_015013302.1 1698745..1699878(-) (pilU) [Acidovorax sp. KKS102]
MEIFSFLNVMVEKGGSDLFFSVGAPVNLKIEGVTHPLKMPALLPGQVKQLAYSVMNEKQIGEFEAKQEMNLSISAENLGR
FRVNVFVQRGETGMVVRYIKNKIPPLAALGLPPVLEKLVLRKRGLVLVTGATGSGKSTTLASMINYRNENVTGHILTIED
PLEFLHAHKRSVVDQREVGIDTQSYEEALKNALREAPDVIMIGEIRDRNTMKQAIAYAETGHLCLSTLHANNANQAMERV
INFFPEDAHHQLLMDLSLNLAGVISQRLIPGLHEKLVPAVEVMLNSPYIADLIAKGEFSGIKEAMGHSTEIGMCTFDQAL
YQLYTDGRISLDEALHNADSRTDLALRVRLAAGVTTQDAGDLSIDTSSPMQSASRLS

Nucleotide

• Length: 1134 bp

>NTDB_id=53894 C380_RS07735 WP_015013302.1 1698745..1699878(-) (pilU) [Acidovorax sp. KKS102]
ATGGAAATCTTCAGCTTCTTGAACGTCATGGTCGAAAAGGGAGGCTCGGACCTCTTTTTCAGTGTCGGCGCGCCGGTCAA
TCTCAAGATCGAAGGGGTCACCCACCCGTTGAAGATGCCCGCCTTGCTGCCCGGCCAGGTCAAGCAACTGGCCTACTCGG
TCATGAACGAAAAGCAGATCGGCGAGTTCGAGGCCAAGCAGGAGATGAACCTGTCGATCTCGGCCGAGAACCTGGGGCGC
TTCCGGGTGAACGTTTTTGTGCAGCGCGGCGAAACCGGCATGGTGGTGCGCTACATCAAGAACAAGATCCCGCCACTGGC
CGCACTGGGCCTGCCCCCGGTGCTGGAAAAGCTGGTGCTGCGCAAGCGTGGCCTGGTGCTGGTGACCGGCGCCACCGGCT
CGGGCAAATCGACCACGCTGGCGTCGATGATCAACTACCGCAACGAGAACGTCACGGGCCACATCCTCACCATCGAAGAC
CCGCTGGAGTTCTTGCACGCGCACAAGCGCTCGGTGGTGGACCAGCGCGAGGTGGGCATCGACACGCAGTCGTACGAAGA
AGCCCTGAAGAACGCGCTGCGCGAGGCACCCGACGTGATCATGATCGGCGAGATCCGCGACCGCAACACCATGAAGCAGG
CCATTGCCTATGCCGAGACGGGCCACCTGTGCCTGTCCACGCTGCACGCCAACAATGCCAACCAGGCCATGGAGCGGGTC
ATCAACTTCTTCCCCGAGGATGCGCACCACCAGCTGCTGATGGACCTGAGCCTGAACCTGGCTGGCGTGATCTCGCAGCG
CCTGATCCCCGGCCTGCACGAAAAGCTGGTGCCTGCGGTGGAGGTGATGCTCAACTCGCCCTACATCGCGGACCTGATCG
CCAAGGGCGAGTTCTCCGGCATCAAGGAGGCCATGGGCCACAGCACCGAGATCGGCATGTGCACCTTTGACCAGGCGCTG
TACCAGCTCTACACCGACGGCCGCATCTCGCTGGACGAGGCGCTACACAACGCCGACTCGCGCACCGACCTGGCGCTGCG
CGTGCGCCTGGCGGCGGGCGTGACCACGCAGGATGCGGGGGACCTTTCCATCGACACCTCCTCGCCCATGCAGTCGGCCT
CGCGGCTGTCGTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (46-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	54.958	93.634	0.515
pilU	Vibrio cholerae strain A1552	51.977	93.899	0.488
pilU	Acinetobacter baylyi ADP1	50.992	93.634	0.477
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.183	89.92	0.379
pilT	Acinetobacter baylyi ADP1	41.617	88.594	0.369
pilT	Acinetobacter baumannii D1279779	42.121	87.533	0.369
pilT	Acinetobacter nosocomialis M2	42.121	87.533	0.369
pilT	Acinetobacter baumannii strain A118	42.121	87.533	0.369
pilT	Pseudomonas stutzeri DSM 10701	41.124	89.655	0.369
pilT	Pseudomonas aeruginosa PAK	41.124	89.655	0.369