Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   I6J46_RS02930 Genome accession   NZ_CP069586
Coordinates   620754..621200 (-) Length   148 a.a.
NCBI ID   WP_002116696.1    Uniprot ID   A0A1C2LW36
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 615754..626200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS02905 (I6J46_02905) - 616101..616484 (+) 384 WP_002116996.1 RidA family protein -
  I6J46_RS18475 - 616524..616601 (-) 78 Protein_556 hypothetical protein -
  I6J46_RS02910 (I6J46_02910) bfd 616704..616898 (+) 195 WP_009392016.1 bacterioferritin-associated ferredoxin -
  I6J46_RS02915 (I6J46_02915) bfr 617142..617606 (+) 465 WP_005067113.1 heteropolymeric bacterioferritin subunit Bfr -
  I6J46_RS02920 (I6J46_02920) - 617649..619277 (-) 1629 WP_204085549.1 PglL family O-oligosaccharyltransferase -
  I6J46_RS02925 (I6J46_02925) - 619383..620696 (-) 1314 WP_204085550.1 O-antigen ligase family protein -
  I6J46_RS02930 (I6J46_02930) comP 620754..621200 (-) 447 WP_002116696.1 pilin Machinery gene
  I6J46_RS02935 (I6J46_02935) - 621550..622110 (-) 561 WP_069124527.1 TPM domain-containing protein -
  I6J46_RS02940 (I6J46_02940) - 622104..623186 (-) 1083 WP_204085551.1 TPM domain-containing protein -
  I6J46_RS02945 (I6J46_02945) - 623211..623801 (-) 591 WP_039765214.1 LemA family protein -
  I6J46_RS02950 (I6J46_02950) - 623932..624819 (-) 888 WP_204085552.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15200.35 Da        Isoelectric Point: 4.6894

>NTDB_id=535765 I6J46_RS02930 WP_002116696.1 620754..621200(-) (comP) [Acinetobacter pittii strain FDAARGOS_1216]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYMVRSKVTEGLNLASSYKTTIAENAGNGAANLAVGVPNFAATENVASI
TPDGTTGKIEILYTDKAKGLTLTLTPYDGAEGGTAIAAGTVPTNQITWVCTVDSAANAKYVPSNCRGS

Nucleotide


Download         Length: 447 bp        

>NTDB_id=535765 I6J46_RS02930 WP_002116696.1 620754..621200(-) (comP) [Acinetobacter pittii strain FDAARGOS_1216]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATCGCGAT
TCCAGCTTATCAAGATTATATGGTTCGTTCAAAAGTAACAGAAGGTTTGAATTTAGCTTCATCTTATAAGACTACAATTG
CTGAAAATGCTGGAAATGGTGCTGCGAATTTAGCAGTAGGAGTTCCTAACTTTGCTGCAACAGAAAATGTAGCATCGATC
ACGCCAGATGGGACTACAGGAAAAATTGAAATTCTATATACAGATAAAGCAAAAGGTTTAACTTTAACTTTAACTCCATA
TGACGGCGCTGAAGGTGGTACAGCGATTGCTGCTGGGACTGTACCAACAAACCAAATTACTTGGGTATGTACTGTAGATT
CAGCTGCTAATGCTAAATATGTACCATCAAATTGCCGTGGTTCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-146)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2LW36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

50.307

100

0.554
  pilA Ralstonia pseudosolanacearum GMI1000

48.75

100

0.527
  pilA2 Legionella pneumophila str. Paris

51.701

99.324

0.514
  pilA2 Legionella pneumophila strain ERS1305867

51.02

99.324

0.507
  pilA/pilA1 Eikenella corrodens VA1

41.975

100

0.459
  pilA Acinetobacter baumannii strain A118

42.667

100

0.432
  pilA Pseudomonas aeruginosa PAK

36.527

100

0.412
  pilA Vibrio cholerae strain A1552

35.484

100

0.372
  pilA Vibrio cholerae C6706

35.484

100

0.372
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

35.484

100

0.372