Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JN757_RS23945 Genome accession   NZ_CP069352
Coordinates   5480771..5481988 (+) Length   405 a.a.
NCBI ID   WP_203419530.1    Uniprot ID   -
Organism   Pseudomonas granadensis isolate CT364     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5475771..5486988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN757_RS23925 (JN757_23915) - 5477205..5477501 (+) 297 WP_093098244.1 DUF2845 domain-containing protein -
  JN757_RS23930 (JN757_23920) - 5477769..5478122 (-) 354 WP_203419527.1 BON domain-containing protein -
  JN757_RS23935 (JN757_23925) - 5478420..5478842 (-) 423 WP_203419528.1 pilin -
  JN757_RS23940 (JN757_23930) pilB 5479068..5480768 (+) 1701 WP_203419529.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JN757_RS23945 (JN757_23935) pilC 5480771..5481988 (+) 1218 WP_203419530.1 type II secretion system F family protein Machinery gene
  JN757_RS23950 (JN757_23940) pilD 5481990..5482862 (+) 873 WP_203419531.1 A24 family peptidase Machinery gene
  JN757_RS23955 (JN757_23945) coaE 5482859..5483482 (+) 624 WP_203419532.1 dephospho-CoA kinase -
  JN757_RS23960 (JN757_23950) yacG 5483479..5483679 (+) 201 WP_093098232.1 DNA gyrase inhibitor YacG -
  JN757_RS23965 (JN757_23955) - 5483686..5483901 (-) 216 WP_203419533.1 hypothetical protein -
  JN757_RS23970 (JN757_23960) - 5483967..5484656 (-) 690 WP_203419534.1 energy-coupling factor ABC transporter permease -
  JN757_RS23975 (JN757_23965) - 5484774..5485400 (+) 627 WP_007909887.1 DUF1780 domain-containing protein -
  JN757_RS23980 (JN757_23970) - 5485397..5485924 (+) 528 WP_203419535.1 MOSC domain-containing protein -
  JN757_RS23985 (JN757_23975) - 5485977..5486150 (+) 174 WP_042561123.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43886.46 Da        Isoelectric Point: 10.0476

>NTDB_id=534141 JN757_RS23945 WP_203419530.1 5480771..5481988(+) (pilC) [Pseudomonas granadensis isolate CT364]
MAVKAAKTSTYAWEGTDRKGSKVTGELSGQNAALIKAQLRKQGITPGKVRKKSASLLSFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKVIDDVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPSAVLFVAAVVTGILLVKVVPQFQSVFSGFGAELPGFTLMVISLSEFMQAWWWAILGALIAAFFGFR
HALKTSQALRDRRDAWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGAAGNVVFKRAILRIRQDVSTGM
QLNFSMRSTGVFPTMAVQMTAIGEESGALDDMLDKVAGFYEEEVDNMVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=534141 JN757_RS23945 WP_203419530.1 5480771..5481988(+) (pilC) [Pseudomonas granadensis isolate CT364]
ATGGCGGTCAAGGCAGCAAAAACCAGCACGTACGCCTGGGAAGGTACGGACCGCAAAGGCAGCAAAGTCACCGGTGAGTT
GAGCGGGCAGAATGCCGCATTGATCAAGGCGCAGTTGCGCAAACAGGGGATCACTCCGGGCAAGGTGCGCAAGAAGTCGG
CCTCGTTGCTGAGTTTCGGAAAACGCATCAAGGCTCAGGACATCGCCCTGTTCACCCGGCAAATGGCAACGATGATGAAG
GCCGGCGTGCCGCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGAAAACCCGGCGATGCGCAAAGTCATTGACGA
TGTTAAACAAGAGGTGGCCGCCGGTAACAGTTTCGCCGCGGCGCTGCGCAAGAAGCCGCAATACTTCGACGAGTTGTATT
GCAACCTCGTCGATGCCGGCGAACAGTCCGGGGCACTCGACACCCTGCTCGAACGCGTCGCCACCTATAAGGAAAAAAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGAGCGCCGTCCTCTTCGTGGCGGCCGTGGTGACCGGCAT
TTTGCTGGTGAAAGTGGTGCCGCAGTTTCAGTCGGTGTTTTCCGGGTTTGGCGCCGAGTTGCCTGGGTTCACCTTGATGG
TGATCAGCCTGTCAGAATTCATGCAGGCGTGGTGGTGGGCGATTCTCGGAGCACTGATCGCGGCGTTTTTCGGCTTCCGC
CATGCGCTGAAAACCTCACAGGCATTACGCGATCGCCGCGACGCCTGGCTGCTGAAACTGCCGCTGGTGGGCACGCTGAT
GTACAAGTCCGCCGTGGCGCGATTTGCCCGCACTTTGTCGACCACCTTCGCTGCCGGCGTACCGCTGGTGGAAGCCCTCG
ACTCGGTAGCGGGCGCTGCGGGCAATGTCGTGTTCAAACGTGCCATCCTGCGGATCCGCCAGGACGTCTCTACCGGTATG
CAGCTGAATTTTTCCATGCGCAGCACCGGGGTCTTCCCGACCATGGCCGTGCAGATGACCGCAATTGGTGAAGAGTCCGG
GGCGCTGGACGATATGCTCGACAAGGTCGCCGGCTTTTACGAAGAGGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTCGTGCTCGGGGTCGTCGTCGGCGGTCTGGTGGTGGCCATGTATCTGCCGATCTTCCAG
CTCGGCTCAGCGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.333

100

0.733
  pilC Acinetobacter baumannii D1279779

59.559

100

0.6
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Legionella pneumophila strain ERS1305867

54.156

98.025

0.531
  pilC Vibrio cholerae strain A1552

44.472

100

0.447
  pilG Neisseria gonorrhoeae MS11

44.417

99.506

0.442
  pilG Neisseria meningitidis 44/76-A

43.672

99.506

0.435
  pilC Vibrio campbellii strain DS40M4

41.162

100

0.42
  pilC Thermus thermophilus HB27

39.196

98.272

0.385