Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | JN757_RS23950 | Genome accession | NZ_CP069352 |
| Coordinates | 5481990..5482862 (+) | Length | 290 a.a. |
| NCBI ID | WP_203419531.1 | Uniprot ID | - |
| Organism | Pseudomonas granadensis isolate CT364 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5476990..5487862
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JN757_RS23925 (JN757_23915) | - | 5477205..5477501 (+) | 297 | WP_093098244.1 | DUF2845 domain-containing protein | - |
| JN757_RS23930 (JN757_23920) | - | 5477769..5478122 (-) | 354 | WP_203419527.1 | BON domain-containing protein | - |
| JN757_RS23935 (JN757_23925) | - | 5478420..5478842 (-) | 423 | WP_203419528.1 | pilin | - |
| JN757_RS23940 (JN757_23930) | pilB | 5479068..5480768 (+) | 1701 | WP_203419529.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JN757_RS23945 (JN757_23935) | pilC | 5480771..5481988 (+) | 1218 | WP_203419530.1 | type II secretion system F family protein | Machinery gene |
| JN757_RS23950 (JN757_23940) | pilD | 5481990..5482862 (+) | 873 | WP_203419531.1 | A24 family peptidase | Machinery gene |
| JN757_RS23955 (JN757_23945) | coaE | 5482859..5483482 (+) | 624 | WP_203419532.1 | dephospho-CoA kinase | - |
| JN757_RS23960 (JN757_23950) | yacG | 5483479..5483679 (+) | 201 | WP_093098232.1 | DNA gyrase inhibitor YacG | - |
| JN757_RS23965 (JN757_23955) | - | 5483686..5483901 (-) | 216 | WP_203419533.1 | hypothetical protein | - |
| JN757_RS23970 (JN757_23960) | - | 5483967..5484656 (-) | 690 | WP_203419534.1 | energy-coupling factor ABC transporter permease | - |
| JN757_RS23975 (JN757_23965) | - | 5484774..5485400 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| JN757_RS23980 (JN757_23970) | - | 5485397..5485924 (+) | 528 | WP_203419535.1 | MOSC domain-containing protein | - |
| JN757_RS23985 (JN757_23975) | - | 5485977..5486150 (+) | 174 | WP_042561123.1 | DUF3094 family protein | - |
| JN757_RS23990 (JN757_23980) | - | 5486214..5487512 (+) | 1299 | WP_090286386.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32171.37 Da Isoelectric Point: 7.4001
>NTDB_id=534142 JN757_RS23950 WP_203419531.1 5481990..5482862(+) (pilD) [Pseudomonas granadensis isolate CT364]
MPLDELFALYPLAFVGAALLLGLVVGSFLNVLVWRLPKMLERDWRQQAHDVLGLPIETPQPTYNLMLPHSECPHCAHRIR
AWENIPVLSYLCLRGRCSACAAPISKRYPLTELACGVLSAFIAWHFGFGWQAGLLMFLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIINSFGLFVPLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLASLVG
AVIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQSVGLK
MPLDELFALYPLAFVGAALLLGLVVGSFLNVLVWRLPKMLERDWRQQAHDVLGLPIETPQPTYNLMLPHSECPHCAHRIR
AWENIPVLSYLCLRGRCSACAAPISKRYPLTELACGVLSAFIAWHFGFGWQAGLLMFLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIINSFGLFVPLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLASLVG
AVIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=534142 JN757_RS23950 WP_203419531.1 5481990..5482862(+) (pilD) [Pseudomonas granadensis isolate CT364]
ATGCCCCTCGACGAATTGTTCGCCCTCTATCCGCTGGCCTTTGTCGGCGCCGCGCTGCTGCTCGGGCTGGTGGTTGGCAG
CTTTCTCAATGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCACACGATGTACTTGGCC
TGCCGATCGAAACGCCGCAACCCACTTACAACCTGATGCTGCCACATTCCGAATGCCCGCATTGCGCGCATCGGATTCGC
GCCTGGGAAAACATTCCCGTGCTGAGCTACCTGTGCCTGCGCGGACGTTGCTCGGCGTGCGCTGCCCCGATCAGCAAGCG
TTACCCGCTGACCGAGTTGGCCTGCGGAGTGCTGTCGGCGTTCATAGCCTGGCATTTCGGTTTCGGCTGGCAGGCGGGTT
TGCTGATGTTCCTCACCTGGGGACTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTGCTGCCCGATGTACTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCATCAACAGCTTCGGGCTGTTCGTGCCGTTGCACGATGCATTGTGGGGGGCGGT
GGCCGGATACCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGTGACT
TTAAATTATTGGCGCTGCTGGGCGCGTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTGCTGGCATCGCTGGTCGGC
GCGGTGATCGGCGTGATCCTGCTGCGCCTGCGCGAGCAAAAAACCTCGACGCCGATTCCTTTCGGTCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCCCTCGACGAATTGTTCGCCCTCTATCCGCTGGCCTTTGTCGGCGCCGCGCTGCTGCTCGGGCTGGTGGTTGGCAG
CTTTCTCAATGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCACACGATGTACTTGGCC
TGCCGATCGAAACGCCGCAACCCACTTACAACCTGATGCTGCCACATTCCGAATGCCCGCATTGCGCGCATCGGATTCGC
GCCTGGGAAAACATTCCCGTGCTGAGCTACCTGTGCCTGCGCGGACGTTGCTCGGCGTGCGCTGCCCCGATCAGCAAGCG
TTACCCGCTGACCGAGTTGGCCTGCGGAGTGCTGTCGGCGTTCATAGCCTGGCATTTCGGTTTCGGCTGGCAGGCGGGTT
TGCTGATGTTCCTCACCTGGGGACTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTGCTGCCCGATGTACTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCATCAACAGCTTCGGGCTGTTCGTGCCGTTGCACGATGCATTGTGGGGGGCGGT
GGCCGGATACCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGTGACT
TTAAATTATTGGCGCTGCTGGGCGCGTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTGCTGGCATCGCTGGTCGGC
GCGGTGATCGGCGTGATCCTGCTGCGCCTGCGCGAGCAAAAAACCTCGACGCCGATTCCTTTCGGTCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.982 |
98.276 |
0.521 |
| pilD | Neisseria gonorrhoeae MS11 |
46.69 |
98.966 |
0.462 |
| pilD | Acinetobacter baumannii D1279779 |
48.897 |
93.793 |
0.459 |
| pilD | Acinetobacter nosocomialis M2 |
48.519 |
93.103 |
0.452 |