Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | HMPREF1038_RS09320 | Genome accession | NC_018630 |
| Coordinates | 1739555..1739950 (-) | Length | 131 a.a. |
| NCBI ID | WP_000282467.1 | Uniprot ID | A0A098Z0L0 |
| Organism | Streptococcus pneumoniae gamPNI0373 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1734555..1744950
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF1038_RS09295 (HMPREF1038_01894) | recX | 1734632..1735408 (+) | 777 | WP_000705093.1 | recombination regulator RecX | - |
| HMPREF1038_RS09300 (HMPREF1038_01895) | - | 1735497..1736030 (+) | 534 | WP_000775321.1 | DUF402 domain-containing protein | - |
| HMPREF1038_RS09305 (HMPREF1038_01896) | - | 1736470..1737225 (-) | 756 | Protein_1758 | epoxyqueuosine reductase QueH | - |
| HMPREF1038_RS09310 (HMPREF1038_01898) | groL | 1737363..1738985 (-) | 1623 | WP_000031573.1 | chaperonin GroEL | - |
| HMPREF1038_RS09315 (HMPREF1038_01899) | groES | 1739001..1739285 (-) | 285 | WP_000917330.1 | co-chaperone GroES | - |
| HMPREF1038_RS09320 (HMPREF1038_01900) | ssbB/cilA | 1739555..1739950 (-) | 396 | WP_000282467.1 | single-stranded DNA-binding protein | Machinery gene |
| HMPREF1038_RS09325 (HMPREF1038_01901) | - | 1740028..1740789 (-) | 762 | WP_001107757.1 | SDR family oxidoreductase | - |
| HMPREF1038_RS09330 (HMPREF1038_01902) | ytpR | 1740822..1741448 (-) | 627 | WP_000578316.1 | YtpR family tRNA-binding protein | - |
| HMPREF1038_RS09335 (HMPREF1038_01903) | - | 1741464..1741781 (-) | 318 | WP_000615767.1 | thioredoxin family protein | - |
| HMPREF1038_RS09340 (HMPREF1038_01904) | - | 1741778..1742077 (-) | 300 | WP_001013974.1 | DUF4651 domain-containing protein | - |
| HMPREF1038_RS13275 | - | 1742275..1742355 (-) | 81 | WP_223200442.1 | hypothetical protein | - |
| HMPREF1038_RS09345 (HMPREF1038_01905) | - | 1742362..1742553 (-) | 192 | WP_001843938.1 | cell wall-binding repeat protein | - |
| HMPREF1038_RS09350 (HMPREF1038_01906) | - | 1742714..1743388 (-) | 675 | WP_000725748.1 | LiaF transmembrane domain-containing protein | - |
| HMPREF1038_RS09355 (HMPREF1038_01907) | - | 1743394..1743840 (-) | 447 | WP_000776589.1 | LytTR family DNA-binding domain-containing protein | - |
| HMPREF1038_RS09360 (HMPREF1038_01908) | - | 1743954..1744457 (-) | 504 | WP_000800942.1 | phosphatase PAP2 family protein | - |
| HMPREF1038_RS09365 (HMPREF1038_01909) | - | 1744454..1744816 (-) | 363 | WP_000078805.1 | DUF2200 domain-containing protein | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14925.89 Da Isoelectric Point: 5.9409
>NTDB_id=53363 HMPREF1038_RS09320 WP_000282467.1 1739555..1739950(-) (ssbB/cilA) [Streptococcus pneumoniae gamPNI0373]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=53363 HMPREF1038_RS09320 WP_000282467.1 1739555..1739950(-) (ssbB/cilA) [Streptococcus pneumoniae gamPNI0373]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTAACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTAACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis SK321 |
98.473 |
100 |
0.985 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
98.473 |
100 |
0.985 |
| ssbA | Streptococcus mutans UA159 |
74.809 |
100 |
0.748 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
70.229 |
100 |
0.702 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
59.821 |
85.496 |
0.511 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.903 |
86.26 |
0.405 |