Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JOA01_RS08775 Genome accession   NZ_CP069079
Coordinates   1741330..1741725 (-) Length   131 a.a.
NCBI ID   WP_217374320.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1736330..1746725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS08755 (JOA01_08760) rpsG 1737628..1738098 (-) 471 WP_105182784.1 30S ribosomal protein S7 -
  JOA01_RS08760 (JOA01_08765) rpsL 1738115..1738528 (-) 414 WP_002940030.1 30S ribosomal protein S12 -
  JOA01_RS08765 (JOA01_08770) groL 1738758..1740380 (-) 1623 WP_217374318.1 chaperonin GroEL -
  JOA01_RS08770 (JOA01_08775) groES 1740479..1740760 (-) 282 WP_217374319.1 co-chaperone GroES -
  JOA01_RS08775 (JOA01_08780) ssbA 1741330..1741725 (-) 396 WP_217374320.1 single-stranded DNA-binding protein Machinery gene
  JOA01_RS10100 - 1741791..1742030 (+) 240 WP_254451606.1 hypothetical protein -
  JOA01_RS10105 - 1742190..1742531 (+) 342 WP_254451607.1 DUF2785 domain-containing protein -
  JOA01_RS08785 (JOA01_08790) ytpR 1742564..1743187 (-) 624 WP_217374321.1 YtpR family tRNA-binding protein -
  JOA01_RS08790 (JOA01_08795) - 1743206..1744162 (-) 957 WP_217374322.1 DUF1002 domain-containing protein -
  JOA01_RS08795 (JOA01_08800) - 1744206..1744526 (-) 321 WP_217374323.1 thioredoxin family protein -
  JOA01_RS08800 (JOA01_08805) - 1744523..1744807 (-) 285 WP_171989715.1 DUF4651 domain-containing protein -
  JOA01_RS08805 (JOA01_08810) pepA 1745020..1746081 (+) 1062 WP_217374324.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14861.75 Da        Isoelectric Point: 5.7930

>NTDB_id=532187 JOA01_RS08775 WP_217374320.1 1741330..1741725(-) (ssbA) [Streptococcus parasuis strain BS26]
MYNKIIAIGRLTAQPELTQTPNGKNLTRVTIAVNRRFKTENGEREADFLNVILWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHHVTEILGQSFQLLESRAQRAMRENNTNDDLANVILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=532187 JOA01_RS08775 WP_217374320.1 1741330..1741725(-) (ssbA) [Streptococcus parasuis strain BS26]
ATGTATAACAAAATCATTGCAATCGGTCGCTTGACGGCCCAACCGGAACTGACTCAAACGCCAAATGGCAAAAATCTGAC
TCGTGTCACAATTGCTGTGAACCGCCGTTTCAAGACAGAAAATGGCGAACGTGAGGCAGATTTTCTCAATGTTATTCTCT
GGGGAAAACTGGCGGAAACACTTGTCTCCTATGGCAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACCATGTGACCGAAATCTTAGGTCAATCTTTCCAGCTACTCGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAATACGAATGATGATTTGGCGAATGTGATTTTGGAAGAGGAAGAATTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae TIGR4

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374
  ssb Latilactobacillus sakei subsp. sakei 23K

42.478

86.26

0.366