Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JHS95_RS01610 Genome accession   NZ_CP068627
Coordinates   338016..339761 (+) Length   581 a.a.
NCBI ID   WP_237301911.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333016..344761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS01590 (JHS95_01595) pilM 335315..336331 (+) 1017 WP_237301910.1 type IV pilus biogenesis protein PilM Machinery gene
  JHS95_RS01595 (JHS95_01600) pilN 336315..336893 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  JHS95_RS01600 (JHS95_01605) pilO 336886..337479 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  JHS95_RS01605 (JHS95_01610) pilP 337469..337984 (+) 516 WP_015297395.1 pilus assembly protein PilP Machinery gene
  JHS95_RS01610 (JHS95_01615) pilQ 338016..339761 (+) 1746 WP_237301911.1 type IV pilus secretin PilQ Machinery gene
  JHS95_RS01615 (JHS95_01620) aroK 339950..340468 (+) 519 WP_005381319.1 shikimate kinase AroK -
  JHS95_RS01620 (JHS95_01625) aroB 340500..341600 (+) 1101 WP_237301912.1 3-dehydroquinate synthase -
  JHS95_RS01625 (JHS95_01630) - 341653..343170 (+) 1518 WP_237301913.1 SPOR domain-containing protein -
  JHS95_RS01630 (JHS95_01635) - 343240..344079 (+) 840 WP_005486862.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63680.77 Da        Isoelectric Point: 4.4353

>NTDB_id=530018 JHS95_RS01610 WP_237301911.1 338016..339761(+) (pilQ) [Vibrio parahaemolyticus strain LH80]
MKMRQGLTRTPRMLTGLFSLWLFLLLAPLAAEDVQSNALKSIDFRTNKSKDAVIVVELASPAAIVDVKRVQEGLSIDLMN
TSVKDEQLYLLDVKDFATVVESVEVFRDTSTTRLVAYIDEEYTHDYRLTGRYLEITVSKLKPNEKVPDKSILEKEGKLIS
INFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQL
EKQKLTEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVKQ
VQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDGVGIDDFLNVNLAATNPNAA
SIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTPQI
TPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR
SYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=530018 JHS95_RS01610 WP_237301911.1 338016..339761(+) (pilQ) [Vibrio parahaemolyticus strain LH80]
ATGAAAATGAGACAAGGATTAACACGTACACCAAGGATGCTTACTGGGCTCTTCTCCTTATGGTTGTTTTTACTTCTAGC
CCCTTTAGCAGCAGAAGATGTACAGTCTAATGCGCTCAAGAGCATCGACTTTCGCACTAACAAAAGCAAAGATGCCGTGA
TTGTGGTGGAGCTTGCATCCCCGGCGGCTATTGTTGATGTTAAACGTGTTCAAGAAGGATTAAGTATTGATTTAATGAAC
ACGTCGGTAAAAGACGAACAGCTTTACCTTCTCGACGTGAAAGATTTCGCGACGGTGGTGGAAAGTGTGGAAGTGTTCCG
CGATACCTCCACCACACGATTAGTTGCGTATATCGATGAAGAATACACGCATGACTATCGTTTGACGGGGCGTTATCTTG
AAATCACTGTCAGCAAGCTTAAACCAAATGAAAAAGTGCCAGACAAGAGCATCTTAGAAAAAGAAGGCAAGCTGATTTCG
ATTAACTTCCAAGACATTCCTGTGCGTAACGTTTTGCAGCTGATTGCAGATTACAACCAGTTTAACTTGGTGGTTTCGGA
CTCTGTCGAAGGCAACCTTACATTGCGTCTTGATGGTGTGCCGTGGCAGCAAGTGCTCGACATCATCTTGCAAGTGAAAG
GGTTAGATAAGCGTGTTGATGGCAACGTGATTTTGGTCGCTCCGACCGATGAGCTGGATTTGCGCGAGAAGCAGCAGTTA
GAAAAACAAAAACTGACGGAAGAAATGGGGGAACTTTCATCAGAAATCATCAAAGTCAATTTTGCTAAAGCTTCGGATAT
TGCAGAGATGATCAATGGTGAAGGCAACATTAGTATGTTGTCAGAGCGTGGCAGTATGACCATTGATGAGCGAACCAATT
CGCTATTAATCAGAGAATTGCCAGAGAACATCGCCGTTATTCGCGAAATCATTGAATCGCTCGATATCCCAGTCAAACAA
GTACAAATTGAAGCCCGAATTGTCACCATCAGTGAGGGTAACATGGATGAGTTAGGTATTCGTTGGGGCTTCACATCTAT
TAATGGTAATAACACCGTTGGTGGCTCTATTGAGAACAACCTAGCGACAATCGGTTTGTACGAAGGTGGTGGTGATGGCG
AAGGTGAAGAGGGTGGTGATGGTGTTGGTATCGATGATTTTCTTAATGTGAATTTAGCCGCGACCAACCCGAATGCGGCG
AGCATTGCGTTCCAAGTGGCAAAGTTAGGTTCTGATACATTATTGGACTTAGAGCTGTCTGCATTGCAGCAAGAATCAAA
AGCAGAAATCATTTCGAGCCCACGATTGATTACGACCAATAAGAAGCCCGCGTACATTGAACAAGGTACCGAAATTCCTT
ATCTAGAATCTTCATCGAGTGGTGCAACGTCAGTGACCTTTAAAAAAGCGGTGTTGAGCTTGAAGGTGACACCGCAGATC
ACACCTGACAATCGTTTAGTGTTGGATCTGAGTGTGACCCAAGACCGACCTGGTAAGGTAGTGAAAACGGGCACAGGAGA
GGCAATGGCAATTGATACGCAGCGGATTGGCACCCAAGTTCTGGTGAATAATGGTGAGACGGTTGTGCTCGGTGGTATTT
TTCAGCACAGCATTACTAACTCAGTGGATAAAGTGCCATTGTTGGGCGATCTTCCGCTATTAGGCGCACTTTTCCGCCGA
AGTTACGAAAACGTTGGTAAAAGTGAGTTACTAATTTTCGTTACGCCTAAGGTCGTTATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(421-579)

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

91.924

100

0.921
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.408

97.762

0.747
  pilQ Vibrio cholerae strain A1552

76.408

97.762

0.747
  pilQ Legionella pneumophila strain ERS1305867

41.016

94.836

0.389
  pilQ Legionella pneumophila strain Lp02

41.016

94.836

0.389
  pilQ Pseudomonas aeruginosa PAK

40.468

95.697

0.387
  pilQ Acinetobacter baumannii D1279779

37.688

100

0.387
  pilQ Acinetobacter baumannii strain A118

37.688

100

0.387
  comQ Acinetobacter baylyi ADP1

38.636

98.451

0.38