Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   JHS95_RS01595 Genome accession   NZ_CP068627
Coordinates   336315..336893 (+) Length   192 a.a.
NCBI ID   WP_015297396.1    Uniprot ID   A0A243VIJ8
Organism   Vibrio parahaemolyticus strain LH80     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331315..341893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS01580 (JHS95_01585) oxyR 331638..332546 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  JHS95_RS01585 (JHS95_01590) - 332602..335172 (-) 2571 WP_005496567.1 penicillin-binding protein 1A -
  JHS95_RS01590 (JHS95_01595) pilM 335315..336331 (+) 1017 WP_237301910.1 type IV pilus biogenesis protein PilM Machinery gene
  JHS95_RS01595 (JHS95_01600) pilN 336315..336893 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  JHS95_RS01600 (JHS95_01605) pilO 336886..337479 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  JHS95_RS01605 (JHS95_01610) pilP 337469..337984 (+) 516 WP_015297395.1 pilus assembly protein PilP Machinery gene
  JHS95_RS01610 (JHS95_01615) pilQ 338016..339761 (+) 1746 WP_237301911.1 type IV pilus secretin PilQ Machinery gene
  JHS95_RS01615 (JHS95_01620) aroK 339950..340468 (+) 519 WP_005381319.1 shikimate kinase AroK -
  JHS95_RS01620 (JHS95_01625) aroB 340500..341600 (+) 1101 WP_237301912.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.95 Da        Isoelectric Point: 6.9944

>NTDB_id=530015 JHS95_RS01595 WP_015297396.1 336315..336893(+) (pilN) [Vibrio parahaemolyticus strain LH80]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=530015 JHS95_RS01595 WP_015297396.1 336315..336893(+) (pilN) [Vibrio parahaemolyticus strain LH80]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGATTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.983

94.271

0.594