Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABCA12_RS14190 Genome accession   NZ_CP068253
Coordinates   2969754..2970980 (+) Length   408 a.a.
NCBI ID   WP_201897849.1    Uniprot ID   -
Organism   Acinetobacter junii strain CAM121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2964754..2975980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS14155 (ABCA12_2901) rimP 2965379..2965903 (-) 525 WP_004916844.1 ribosome maturation factor RimP -
  ABCA12_RS14175 (ABCA12_2902) secG 2966526..2966855 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  ABCA12_RS14180 (ABCA12_2903) tpiA 2966868..2967659 (-) 792 WP_004958617.1 triose-phosphate isomerase -
  ABCA12_RS14185 (ABCA12_2904) pilB 2968005..2969729 (+) 1725 WP_005403575.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABCA12_RS14190 (ABCA12_2905) pilC 2969754..2970980 (+) 1227 WP_201897849.1 type II secretion system F family protein Machinery gene
  ABCA12_RS14195 (ABCA12_2906) pilD 2970980..2971840 (+) 861 WP_201897850.1 prepilin peptidase Machinery gene
  ABCA12_RS14200 (ABCA12_2907) coaE 2971842..2972441 (+) 600 WP_201897851.1 dephospho-CoA kinase -
  ABCA12_RS14205 (ABCA12_2908) - 2972438..2973349 (-) 912 WP_201897852.1 DMT family transporter -
  ABCA12_RS14210 (ABCA12_2909) rlmB 2973380..2974129 (-) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABCA12_RS14215 (ABCA12_2910) - 2974318..2974644 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45005.40 Da        Isoelectric Point: 9.8134

>NTDB_id=528642 ABCA12_RS14190 WP_201897849.1 2969754..2970980(+) (pilC) [Acinetobacter junii strain CAM121]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKSEVEGGNTFAGALKKYPQYFDTLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFTSFGADLPAFTQMVVNMSKWMQEYWFILIIAIGIFIT
GFLEAKKRSKKFRDTLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDVA
TGQQLQFAMRVSNRFPAMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=528642 ABCA12_RS14190 WP_201897849.1 2969754..2970980(+) (pilC) [Acinetobacter junii strain CAM121]
ATGGCAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCAAAAGTCACCTTACGTAAACAAGGTGTGACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATTACGGTTTTCACACGCCAATTAGCTACA
ATGATGAAAGCGGGTGTACCCTTGGTACAAGGTTTCGAGATAGTTGCTGAAGGCTTGGAAAACCCATCCATGCGTGAGGT
TGTCCTGGGATTAAAAAGCGAGGTTGAAGGTGGTAATACTTTCGCTGGTGCTTTAAAAAAATATCCTCAATATTTCGATA
CCTTATTTTGTTCACTGGTTGAATCAGGTGAACAATCTGGCGCGCTTGAGACCATGCTAGATCGTGTCGCGGTATATAAG
GAAAAAAGTGAGTTACTCAAACAAAAAATTAAAAAAGCGATGAAATATCCTGCCACTGTTATCGTTGTAGCTGTAATTGT
AACAATCATTCTAATGGTTAAGGTAGTACCCGTTTTCCAAGACCTCTTTACATCCTTTGGAGCTGATCTACCAGCTTTTA
CCCAAATGGTTGTAAATATGTCTAAATGGATGCAAGAGTATTGGTTTATCCTCATTATTGCTATAGGTATTTTTATCACA
GGATTCTTGGAGGCAAAAAAACGTAGTAAAAAGTTTAGAGATACATTGGATAAGCTTGCTCTAAAATTGCCGATTTTTGG
AGATCTTGTATATAAAGCAATTATTGCTCGCTATAGCCGCACTTTAGCTACCACTTTTGCTGCAGGTGTGCCATTAATTG
ATGCACTTGAATCCACAGCTGGCGCTACTAACAATGTGGTTTACGAGGATGCTGTAATGAAAATTCGAGAAGATGTAGCG
ACTGGACAACAACTTCAATTTGCAATGCGTGTCTCTAATCGATTCCCAGCTATGGCAATCCAAATGGTCGCGATTGGTGA
AGAGTCAGGTGCACTTGATTCGATGTTAGATAAAGTCGCGACACACTATGAAAATGAGGTCGACAACGCAGTCGATGGTC
TGACTTCGATGATGGAACCTCTTATTATGGCAATACTTGGTGTGTTAGTGGGTGGTCTCGTTATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.402

100

0.924
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

60.345

99.51

0.6
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

41.337

99.02

0.409
  pilC Thermus thermophilus HB27

36.658

98.284

0.36