Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABCA12_RS14195 Genome accession   NZ_CP068253
Coordinates   2970980..2971840 (+) Length   286 a.a.
NCBI ID   WP_201897850.1    Uniprot ID   -
Organism   Acinetobacter junii strain CAM121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2965980..2976840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS14175 (ABCA12_2902) secG 2966526..2966855 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  ABCA12_RS14180 (ABCA12_2903) tpiA 2966868..2967659 (-) 792 WP_004958617.1 triose-phosphate isomerase -
  ABCA12_RS14185 (ABCA12_2904) pilB 2968005..2969729 (+) 1725 WP_005403575.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABCA12_RS14190 (ABCA12_2905) pilC 2969754..2970980 (+) 1227 WP_201897849.1 type II secretion system F family protein Machinery gene
  ABCA12_RS14195 (ABCA12_2906) pilD 2970980..2971840 (+) 861 WP_201897850.1 prepilin peptidase Machinery gene
  ABCA12_RS14200 (ABCA12_2907) coaE 2971842..2972441 (+) 600 WP_201897851.1 dephospho-CoA kinase -
  ABCA12_RS14205 (ABCA12_2908) - 2972438..2973349 (-) 912 WP_201897852.1 DMT family transporter -
  ABCA12_RS14210 (ABCA12_2909) rlmB 2973380..2974129 (-) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABCA12_RS14215 (ABCA12_2910) - 2974318..2974644 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32073.69 Da        Isoelectric Point: 7.8246

>NTDB_id=528643 ABCA12_RS14195 WP_201897850.1 2970980..2971840(+) (pilD) [Acinetobacter junii strain CAM121]
MQSFFLYFLENPTALYLAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHHEQPIIDQSKLTLSQPVSTCPKCQTP
IKWFQNIPLISWLALRGKCGTCKNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTANAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=528643 ABCA12_RS14195 WP_201897850.1 2970980..2971840(+) (pilD) [Acinetobacter junii strain CAM121]
ATGCAATCTTTTTTCCTTTACTTTTTAGAAAATCCAACTGCACTTTACCTTGCAGTTGGATTAATCAGCCTGTGCATCGG
CAGTTTTTTAAATGTTGTGATCTTTCGTACTCCAAAAATGATGGAGCAAGAATGGCATCAAGAATGCCAAATGCTTTTAC
ACCATGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGTTTCTACCTGCCCTAAGTGTCAAACGCCA
ATTAAATGGTTCCAAAACATCCCTCTTATTAGTTGGTTAGCGCTACGCGGTAAATGTGGCACTTGCAAAAATCCAATTAG
CATTCGCTACCCGTTGATTGAACTACTTACTATGATCTGTTCATTGATCGTTGTAGCAGTATTCGGTGCAACAATTCAGA
TGCTGTTCGGCTTAATTCTAACGTGGACACTGATTGCACTCACTTTTATTGATTTTGATACACAATTACTACCTGATCGC
TTTACGCTACCTTTAGCAGCATTAGGTCTGGGTATTAATACTTTTGCAATCTATACAACGGCTAACGCTGCGATCTGGGG
CTATTTAATCGGTTTTCTATGTCTTTGGATTGTGTATTACCTATTCAAAATCATCACGGGCAAAGAAGGCATGGGCTATG
GTGATTTTAAATTGCTTGCAGCCCTTGGTGCATGGATGGGTCCGATGATGTTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGCGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTCGCATTTGGTCCTTATATTGCAAT
TGCCGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.469

100

0.815
  pilD Acinetobacter baumannii D1279779

81.119

100

0.811
  pilD Vibrio cholerae strain A1552

51.568

100

0.517
  pilD Vibrio campbellii strain DS40M4

51.128

93.007

0.476
  pilD Neisseria gonorrhoeae MS11

45.788

95.455

0.437