Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I6J08_RS02670 Genome accession   NZ_CP068219
Coordinates   519100..519366 (+) Length   88 a.a.
NCBI ID   WP_046466868.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1151     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514100..524366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J08_RS02640 (I6J08_02640) - 514835..515038 (+) 204 WP_017636256.1 YqgQ family protein -
  I6J08_RS02645 (I6J08_02645) - 515035..516021 (+) 987 WP_017636255.1 ROK family glucokinase -
  I6J08_RS02650 (I6J08_02650) - 516021..516344 (+) 324 WP_017636254.1 MTH1187 family thiamine-binding protein -
  I6J08_RS02655 (I6J08_02655) - 516348..516971 (+) 624 WP_017636253.1 MBL fold metallo-hydrolase -
  I6J08_RS02660 (I6J08_02660) comGA 517018..517992 (+) 975 WP_070453859.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J08_RS02665 (I6J08_02665) comGB 517964..519031 (+) 1068 WP_029055748.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6J08_RS02670 (I6J08_02670) comGC 519100..519366 (+) 267 WP_046466868.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J08_RS02675 (I6J08_02675) comGD 519356..519793 (+) 438 WP_046466732.1 competence type IV pilus minor pilin ComGD -
  I6J08_RS02680 (I6J08_02680) - 519840..520073 (+) 234 WP_119483297.1 hypothetical protein -
  I6J08_RS02685 (I6J08_02685) - 520647..521165 (+) 519 WP_181299894.1 shikimate kinase -
  I6J08_RS02690 (I6J08_02690) gcvT 521337..522428 (+) 1092 WP_017636954.1 glycine cleavage system aminomethyltransferase GcvT -
  I6J08_RS02695 (I6J08_02695) gcvPA 522447..523796 (+) 1350 WP_017636955.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9672.25 Da        Isoelectric Point: 7.1319

>NTDB_id=528175 I6J08_RS02670 WP_046466868.1 519100..519366(+) (comGC) [Staphylococcus pasteuri strain FDAARGOS_1151]
MLLVLLIISLLLILIIPNIAKQTAHIQTTGCDAQVKMVNSQIEAYTLKHNRNPNTIQDLISEGFIKENQKNCKSGETISI
NNGEAVAN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=528175 I6J08_RS02670 WP_046466868.1 519100..519366(+) (comGC) [Staphylococcus pasteuri strain FDAARGOS_1151]
ATGTTACTAGTTTTATTAATAATTAGCTTATTGCTTATTCTAATTATTCCCAATATAGCTAAACAAACCGCTCATATACA
AACTACTGGTTGTGACGCTCAAGTGAAAATGGTTAATAGTCAAATTGAAGCATATACTTTAAAACACAATAGAAATCCTA
ATACCATCCAAGATTTAATTTCTGAAGGATTTATTAAAGAAAACCAAAAAAATTGCAAATCAGGAGAAACTATTAGTATT
AATAATGGCGAAGCGGTTGCAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

83.333

81.818

0.682
  comGC Staphylococcus aureus N315

83.333

81.818

0.682
  comYC Streptococcus gordonii str. Challis substr. CH1

42.222

100

0.432
  comGC/cglC Streptococcus pneumoniae TIGR4

40

96.591

0.386
  comGC/cglC Streptococcus pneumoniae Rx1

40

96.591

0.386
  comGC/cglC Streptococcus pneumoniae D39

40

96.591

0.386
  comGC/cglC Streptococcus pneumoniae R6

40

96.591

0.386
  comYC Streptococcus suis isolate S10

49.275

78.409

0.386
  comGC/cglC Streptococcus mitis NCTC 12261

38.636

100

0.386
  comYC Streptococcus mutans UA140

44.444

81.818

0.364
  comYC Streptococcus mutans UA159

44.444

81.818

0.364